Published August 20, 2021
| Version 1.4
Software
Open
AmoePy
- 1. University of Potsdam
- 2. INSA Rouen Normandie
Contributors
Data collector:
Other:
Supervisors:
- 1. University of Potsdam
Description
\(\Large\textrm{Deprecated.}\)
New version under this Link
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A Python-based toolbox for analyzing and simulating amoeboid cell motility.
Furthermore, this publication contains two-dimensional cell contour data segmented from the following microscopy data:
- Dictyostelium discoideum (fluorescence microscopy): Link
- Fundulus heteroclitus (fluorescence microscopy): Link1, Link2, Link3
- Hypsophrys nicaraguensis (bright-field microscopy): Link (Movie S1-S4)
The segmentation routines in AmoePy are a modified version of the active contour (snake) algorithm described in [1] and [2]
This Project is part of the Collaborative Research Center SFB 1294 (Project: B02).
Notes
The research of this project has been partially funded by the Deutsche Forschungsgemeinschaft (DFG)
Project-ID 318763901 - SFB1294.