Recent uploads

  • October 20, 2026 (v0.1.0)
    Software
    Open
    Eris: Explicit and Learned Numerical Representations of Protein Structures
    Fernández Villegas, Diego Álvarez Saravia, Diego Medina-Ortiz, David

    Encodes protein structures into validated explicit representations (point clouds, graphs, contact maps, distograms, voxel grids) and GearNet-Edge embeddings for machine learning.

    Uploaded on October 20, 2026

    Part of Kren-AI Lab

    0
    0
  • October 20, 2026 (v2)
    Presentation
    Open
    Quantum Reference Frames for Quantum Fields
    Mele, Fabio Maria

    Suggested citation: Fabio M. Mele, “Quantum Reference Frames for Quantum Fields: Bridging QRF Relativity and the Laboratory,” in International Loop Quantum Gravity Seminar (ILQGS), 2026, webinar, doi:10.5281/zenodo.23479713.

    Uploaded on October 20, 2026

    Part of The International Society on Loop Quantum Gravity

    1 more version exist for this record

    108
    18
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/scANVI
    broadinstitute

    Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas...

    Uploaded on October 20, 2026

    Part of Dockstore

    149 more versions exist for this record

    4991
    981
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/WholeGenomeReprocessing
    broadinstitute

    WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...

    Uploaded on October 20, 2026

    Part of Dockstore

    199 more versions exist for this record

    8288
    2569
  • October 20, 2026 (v1)
    Dataset
    Open
    Replication package for: "Local Crime and Prosocial Behaviours: Evidence from Charitable Donations"
    Perroni, Carlo Scharf, Kimberley Smith, Sarah

    Replication package for: Perroni, Carlo, Kimberley Scharf, Sarah Smith, Oleksandr Talavera, and Linh Vi. “Local Crime and Prosocial Behaviours: Evidence from Charitable Donations.” The Economic Journal (forthcoming). This package contains the code and non-confidential data required to reproduce all tables and figures in the paper. The...

    0
    0
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/WholeGenomeGermlineSingleSample
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 20, 2026

    Part of Dockstore

    196 more versions exist for this record

    7319
    1925
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/vds_to_vcf
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 20, 2026

    Part of Dockstore

    194 more versions exist for this record

    7537
    1933
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/VariantCalling
    broadinstitute

    WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...

    Uploaded on October 20, 2026

    Part of Dockstore

    200 more versions exist for this record

    8215
    2460
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/UltimaGenomicsWholeGenomeCramOnly
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 20, 2026

    Part of Dockstore

    213 more versions exist for this record

    10759
    2874
  • October 20, 2026 (Glimpse2LowPassImputationQC_v1.1.2)
    Software
    Open
    github.com/broadinstitute/warp/UltimaGenomicsJointGenotyping
    broadinstitute

    WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...

    Uploaded on October 20, 2026

    Part of Dockstore

    197 more versions exist for this record

    7915
    2525
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