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August 23, 2018 (v3) Dataset Open Access

Training data for 'Genome annotation with Maker' tutorial (Galaxy Training Material)

Anthony Bretaudeau

The data provided here are part of a Galaxy Training Network tutorial for genome annotation with Maker. It is based on data used in another Maker tutorial. The full genome was downloaded from NCBI, and mitochondria sequence removed from it for simplicity.

Uploaded on November 15, 2018

2 more version(s) exist for this record

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November 13, 2016 (v2) Software Open Access

Effsize - a package for efficient effect size computation

Torchiano, Marco

This package contains the functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha and Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets. The package is available on the CRAN...

Uploaded on November 8, 2018

1 more version(s) exist for this record

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November 5, 2018 (v1.2.0) Dataset Open Access

High quality white matter reference tracts

Wasserthal Jakob; Neher Peter; Maier-Hein Klaus

This dataset contains segmentations of 72 white matter tracts obtained from 105 subjects included in the Human Connectome Project (HCP) young adult dataset (https://www.humanconnectome.org/study/hcp-young-adult). The folder names correspond to the ID of the HCP subjects. The data is part of the...

Uploaded on November 5, 2018

3 more version(s) exist for this record

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March 1, 2019 (v1) Dataset Open Access

Aligned DNA sequence matrix for phylogenetic analyses of the article "A bizarre new species of Lynchius (Amphibia, Anura, Strabomantidae) from the Andes of Ecuador and first report of Lynchius parkeri in Ecuador"

María J. Navarrete; Santiago Ron

Aligned DNA sequence matrix for phylogenetic analyses of the article "A bizarre new species of Lynchius (Amphibia, Anura, Strabomantidae) from the Andes of Ecuador and first report of Lynchius parkeri in Ecuador" The matrix is in NEXUS format. Genes are arranged as follows: RAG1: 1-652...

Uploaded on November 5, 2018

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November 5, 2018 (v1.0) Dataset Open Access

A fish intestinal barrier model to assess transfer of chemicals in vitro - an experimental and computational study

Schug, Hannah

This package presents the third chapter of my PhD thesis and contains supplemental figures and tables in two excel files and the Matlab code for all kinetic models presented.

Uploaded on November 5, 2018

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November 5, 2018 (vv0.0.2) Software Open Access

GIANT: Galaxy-based Interactive tools for ANalysis of Transcriptomic data

Vandel, Jimmy; Gheeraert, Céline; Eeckhoute, Jérôme; Staels, Bart; Lefebvre, Philippe; Dubois-Chevalier, Julie

GIANT is a User-friendly tools suite for micro-arrays analyses and for exploring RNA-seq & Micro-Arrays differential results

Uploaded on November 5, 2018

1 more version(s) exist for this record

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November 5, 2018 (v1) Dataset Open Access

Experteninterview mit Michaela Voigt im Rahmen von Hamburg Open Science

Bondesen, Madeleine

Da sich die HAW Hamburg am hochschulübergreifenden Programm Hamburg Open Science beteiligt, wurde im Rahmen von Hamburg Open Science zur Entwicklung eines Konzeptes für eine Open-Access-freundliche Publikationskultur Michaela Voigt aus dem Team Universitätsverlag/Hochschulschriften/Open Access...

Uploaded on November 5, 2018

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November 1, 2018 (v1) Dataset Open Access

Simulated tracer-gas distribution in a multiscale model of the human lung during multiple-breath nitrogene washout

David Hasler

Content baseline: inletFlow (ASCII format data for flow rate at the mouth in m^3/s, sampling frequency 1kHz) primary_results (ASCII format data table with four colums: time in seconds, N2 concentration (normalized), empty -1, pleural pressure in Pascal) compliance modification (local): inletFlow...

Uploaded on November 5, 2018

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October 30, 2018 (vv0.1) Dataset Open Access

Soil texture classes (USDA system) for 6 soil depths (0, 10, 30, 60, 100 and 200 cm) at 250 m

Tomislav Hengl

Soil texture classes (USDA system) for 6 standard soil depths (0, 10, 30, 60, 100 and 200 cm) at 250 m. Derived from predicted soil texture fractions using the soiltexture package in R. Processing steps are described in detail here. Antartica is not included. To access and visualize maps...

Uploaded on November 2, 2018

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November 1, 2018 (vv1.0) Software Open Access

"Accelerating and parallelizing Lagrangian simulations of mixing-limited reactive transport--Code Repository"

Nick Engdahl; Michael J. Schmidt

Associated code for: Engdahl, et al., "Accelerating and parallelizing Lagrangian simulations of mixing-limited reactive transport"

Uploaded on November 1, 2018

2 more version(s) exist for this record

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