Open repository for EU-funded research outputs from Horizon Europe, Euratom, and earlier Framework Programmes.
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September 15, 2026 (v1)DatasetOpen
Overview This dataset includes Drosophila wing imaginal disc epithelial tissues cultured ex vivo while imaging of Ecadherin-GFP (to mark adherens junctions on the membrane) with spinning disc confocal microscopy. Individual cells of the pouch region of the tissue were segmented and tracked over the movie, and a database was created to house...
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September 22, 2026 (v2)PresentationOpen
Graduate researchers at my institution have sporadically requested assistance with finding datasets through reference chat, email communications and research consultations. The underlying challenge with these requests is often more complex than locating a data source. Researchers tend to start with overly broad concepts (i.e. health...
Uploaded on September 22, 2026
Part of 2026 Midwest Data Librarian Symposium
1 more version exist for this record
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September 22, 2026 (0.7.3)SoftwareOpen
Extract This workflow uses matUtils extract to extract a subtree from an UShER-formatted protobuff (.pb) phylogenetic tree. The samples_in_subtree file must have the name of each sample that is to go into the subtree, one sample per line.
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September 22, 2026 (0.7.3)SoftwareOpen
Tree Nine 🌲 Tree Nine is a phylogenetics workflow that forms the basis of a tuberculosis cluster tracker built with funding from the California Department of Health. Although the cluster tracker frontend is not public, this workflow can still be used to generate cluster information for any arbitrary prokaryote with a non-segmented genome....
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September 22, 2026 (0.7.3)SoftwareOpen
Summarize This workflows uses matUtils summarize to get pretty much all data you'd ever need from an UShER-formatted protobuff (.pb) phylogenetic tree. Outputs include: Basic summary Aberrant (-A) Clades (-A) and sample clades (-C) Haplotypes (-H) Mutations (-A) Samples (-A) Roho score (-R)
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September 22, 2026 (0.7.3)SoftwareOpen
Tree Nine Put diff files on an existing phylogenetic tree using UShER's usher sampled task with a bit of help from SRANWRP, followed by conversion of that tree to Taxonium, Newick, and Nextstrain formats. Samples' SNP distance is calculated and output as a distance matrix, and samples will be placed into clusters based on the...
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July 17, 2026 (v1)DatasetOpen
This repository contains a liver MRI dataset acquired with 3D multi-echo cones MRI. For reconstruction, please refer to https://github.com/MRI-Research/MultiNodeMRI-MICCAI26. Details of the imaging parameters can be found from the following publication: https://papers.miccai.org/miccai-2026/paper/2047_paper.pdf
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June 23, 2026 (v1)SoftwareOpen
Usage Instructions 1) Source Code.zip After downloading, unzip the package into a single folder. All .py files are self-contained and generate the main figures in the paper, along with the complete underlying calculations. The required data and auxiliary files are included in the package, allowing the scripts (i.e., the .py files) to be...
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September 9, 2026 (v1)DatasetOpen
TABLE 1. — Measurements (mm) of dental remains from Kyargan Kyitchaung. Length: mesio-distal length for upper and lower incisors, premolars and molars; Width: bucco-lingual width for upper and lower incisors, premolars and molars. * indicates estimated measurement of damaged tooth. Catalogue no.ToothTaxonLengthWidthKYN-01l...
Uploaded on September 22, 2026
Part of Biodiversity Literature Repository
Published in Comptes Rendus Palevol, 25(15), 264, 2026.
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September 22, 2026 (v1.2.0)SoftwareOpen
Voc4cat-tool is a Python package and command-line tool for creating and maintaining SKOS-vocabularies with Excel and GitHub. The voc4cat tool can be run locally but is also well suited for integration in CI-pipelines. It is for example used to maintain the SKOS vocabulary for catalysis voc4cat on GitHub. Its main features include: Conversion...
