Reproducibility Package for "Reproducible research and GIScience: an evaluation using AGILE conference papers"

Nüst, Daniel

Data and code for analysis and plots used in the manuscript "Reproducible research and GIScience: an evaluation using AGILE conference papers": https://doi.org/10.7287/peerj.preprints.26561v1 The deposited archived includes a Dockerfile and an R Markdown document suitable for use with...

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Airgun-ocean bottom seismometer survey dataset

Azuma, Ryosuke; Hino, Ryota; Ohta, Yusaku; Ito, Yoshihiro; Mochizuki, Kimihiro; Uehara, Kenji; Murai, Yoshio; Sato, Toshinori; Takanami, Tetsuo; Shinohara, Masanao; Kanazawa, Toshihiko

These data are the seismic waveform recordsections and the P-wave velocity model obtained by Azuma et al. (JGR, 2018), collected through an airgun-ocean bottom seismometer (OBS) survey. The recordsections of 29 OBS are 'RAW data' with no waveform procedure and are formatted in SEG-Y. Length of...

microPIECE (microRNA pipeline enhanced by CLIP experiments)

Amsel, Daniel; Billion, André; Vilcinskas, Andreas; Förster, Frank

The microPIECE (microRNA pipeline enhanced by CLIP experiments) takes the AGO-CLIP data from a speciesA and transfers it to a speciesB. Given a set of miRNAs from speciesB it then predicts their targets on the transfered CLIP regions. The archive of the repository was generated using the...

4 more version(s) exist for this record

scipy/scipy: Scipy 1.1.0rc1

Pauli Virtanen; Ralf Gommers; Evgeni Burovski; Travis E. Oliphant; David Cournapeau; Warren Weckesser; alexbrc; Pearu Peterson; endolith; Stefan van der Walt; Nikolay Mayorov; Josh Wilson; Denis Laxalde; Matthew Brett; Jarrod Millman; Lars; eric-jones; Andrew Nelson; Robert Kern; Eric Moore; Tim Leslie; Josef Perktold; CJ Carey; Yu Feng; Jake Vanderplas; Matt Haberland; cowlicks; Eric Larson; Ilhan Polat; Tyler Reddy

SciPy 1.1.0 Release Notes Note: Scipy 1.1.0 is not released yet! SciPy 1.1.0 is the culmination of 7 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release,...

9 more version(s) exist for this record

Arothron: Geometric Morphometrics Analyses

Profico Antonio; Veneziano Alessio; Melchionna Marina; Piras Paolo; Raia Pasquale

Tools for geometric morphometric analysis. The package includes tools of virtual anthropology to align two not articulated parts belonging to the same specimen and to build virtual cavities as endocast. In addition, we supply functions to import and export the coordinates of landmarks and 3D...

4 more version(s) exist for this record

Dataset for "Lattice-Geometry Effects in Garnet Solid Electrolytes: A Lattice-Gas Monte Carlo Simulation Study"

Morgan, Benjamin J.

This repository contains lattice-gas Monte Carlo simulation data and supporting code for the paper "Lattice-Geometry Effects in Garnet Solid Electrolytes: A Lattice-Gas Monte Carlo Simulation Study"

6 more version(s) exist for this record

Modeling of the Nup84 subcomplex of the Nuclear Pore Complex

Shi, Yi; Fernandez-Martinez, Javier; Tjioe, Elina; Pellarin, Riccardo; Kim, Seung Joong; Williams, Rosemary; Schneidman-Duhovny, Dina; Rout, Michael; Sali, Andrej; Chait, Brian

These scripts demonstrate the use of IMP, MODELLER, and PMI in the modeling of the Nup84 complex using 286 DSS/EDC chemical cross-links and an electron microscopy (EM) 2D class average. First, MODELLER is used to generate initial structures for the individual components in the Nup84 complex....

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opencare data

Cottica, Alberto; Guy Melançon

Get primary and secondary data from the opencare project. Primary data refer to the online conversation (posts and comments). Secondary data refer to the ethnographic work done on the primary data (annotations and codes, or tags). You can also access these data through APIs. Learn more on data...

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Single particle tracking data for "Histidine-rich domain of kinases induce phase separation to hyperphosphorylate Pol II CTD"

Lu, Huasong; Yu, Dan; Hansen, Anders S.; Ganguly, Sourav; Liu, Rongdiao; Heckert, Alec; Darzacq, Xavier; Zhou, Qiang

Experimental single-particle tracking (SPT) data supporting "Histidine-rich domain of kinases induce phase separation to hyperphosphorylate Pol II CTD" This dataset contains all the raw SPT data reported in "Histidine-rich domain of kinases induce phase separation to hyperphosphorylate Pol II...

Binary black-hole surrogate waveform catalog

Scott E. Field; Chad R. Galley; Jan S. Hesthaven; Jason Kaye; Manuel Tiglio; Jonathan Blackman; Béla Szilágyi; Mark A. Scheel; Daniel A. Hemberger; Patricia Schmidt; Rory Smith; Christian D. Ott; Michael Boyle; Lawrence E. Kidder; Harald P. Pfeiffer

This repository contains all publicly available numerical relativity surrogate data for waveforms produced by the Spectral Einstein Code. The base method for building surrogate models can be found in Field et al., PRX 4, 031006 (2014). Several numerical relativity surrogate models are currently...

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