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October 16, 2026 (v0.2)SoftwareOpen
This workflow runs the FEELnc tool to annotate long non-coding RNAs. Before annotating these long non-coding RNAs, StringTie will be used to assemble the RNA-seq alignments into potential trancriptions. The gffread tool provides a genome annotation file in GTF format.
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October 16, 2026 (0.9.8)SoftwareOpen
sbmlsim is a collection of python utilities to simplify simulations with SBML models implemented on top of libroadrunner and other libraries with source code available from https://github.com/matthiaskoenig/sbmlsim Features include among others simulation experiments, parameter scans and reports parameter fitting with profile likelihood and...
Uploaded on October 16, 2026
Part of EOSCSecretariat.eu EU Open Research Repository
35 more versions exist for this record
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October 16, 2026 (1.1.9)DatasetOpen
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October 16, 2026 (v1.2)SoftwareOpen
This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract, filter, align and fill gapand the possibility to annotate isotopes, adducts and fragments using the CAMERA R package (Kuhl, C 2012). https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas...
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...
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October 16, 2026 (Multiome_v7.0.4)SoftwareOpen
Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...
