Published January 15, 2023
| Version 1.8
Software
Open
AmoePy
- 1. University of Potsdam
- 2. INSA Rouen Normandie
Contributors
Other:
Researchers:
Supervisors:
- 1. University of Potsdam
Description
A Python-based toolbox for analyzing and simulating amoeboid cell motility.
The analysis routines in AmoePy are based on [DSc1] and were used in [TMo].
The simulation routines in AmoePy are based on [DSc2].
The segmentation routine in AmoePy is a modified version of the active contour (snake) algorithm initially described in [MDr1] and [MDr2] and edited by Valentino Lepro in [VLe].
Furthermore, this publication contains two-dimensional cell contour data segmented from the following microscopy data:
- Dictyostelium discoideum (fluorescence microscopy): [MSt]
- Fundulus heteroclitus (fluorescence microscopy): [RFi1], [RFi2], [RFi3]
- Hypsophrys nicaraguensis (bright-field microscopy): [EBa] (Movie S1-S4)
This Project is part of the Collaborative Research Center SFB 1294 (Project: B02).
In case of suggestions or questions, please feel free to contact us via mail.
Notes
The research of this project has been partially funded by the Deutsche Forschungsgemeinschaft (DFG)
Project-ID 318763901 - SFB1294.
Files
-CHEATSHEET-.pdf
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