AmoePy
- 1. University of Potsdam
- 2. INSA Rouen Normandie
Contributors
Other:
Researchers:
Supervisors:
- 1. University of Potsdam
Description
A Python-based toolbox for analyzing and simulating amoeboid cell motility.
The analysis routines in AmoePy are based on [DSc1] and were used in [TMo1].
The simulation routines in AmoePy are based on [DSc2].
A hands-on guide how to use AmoePy was published in [TMo2].
For the doctoral thesis associated with AmoePy, see [DSc3].
The segmentation routine in AmoePy is a modified version of the active contour (snake) algorithm initially described in [MDr1] and [MDr2] and edited by Valentino Lepro in [VLe].
Furthermore, this publication contains two-dimensional cell contour data segmented from the following microscopy data:
- Dictyostelium discoideum (fluorescence microscopy): [MSt]
- Fundulus heteroclitus (fluorescence microscopy): [RFi1], [RFi2], [RFi3]
- Hypsophrys nicaraguensis (bright-field microscopy): [EBa] (Movie S1-S4)
This Project is part of the Collaborative Research Center SFB 1294 (Project: B02).
In case of suggestions or questions, please feel free to contact us via mail.
Notes
The research of this project has been partially funded by the Deutsche Forschungsgemeinschaft (DFG) Project-ID 318763901 - SFB1294.
Files
-CHEATSHEET-.pdf
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Additional details
Software
- Repository URL
- https://gitup.uni-potsdam.de/CRC1294/B02
- Programming language
- Python
- Development Status
- Active