Published July 11, 2025 | Version v3
Dataset Open

Dataset: Single nucleotide switches confer bacteriophage resistance to Pseudomonas protegens

  • 1. Department of Fundamental Microbiology, NCCR Microbiomes

Contributors

Project leader:

  • 1. Department of Fundamental Microbiolgy, NCCR Microbiomes
  • 2. ROR icon University of Lausanne

Description

Dataset containing : 
- csv files : Output file of the SNPs identified in all the phage-resistant variants (C2, C4, C17 and C18).

- Excel files : 

  • Raw and pre-analyzed data for the bacterial growth analysis. (Bacterial_growth.xlsx)
  • Raw and pre-analised data for the competition assays (Compatition assays.xlsx). 
  • Raw and pre-analised data for the fitness assays in planta (plant experiment.xlsx)  
  • Raw data of the phage adsorption assay (phage adsorption assays.xlsx)  

- Code used for the analysis of all the data.

- Image and data pre analysed for the spatial distribution of the bacteria during competition in vitro (drop_competition.rar)

  • Images of the colonies (GFP and red channel) in bmp format
  • R code used to process and analyse this data (Phage_JV_drop.Rmd)

 

Files

C17_SNP.csv

Files (73.0 MB)

Name Size Download all
md5:fbedefbd02bdd8c8b6549210d3ea9113
222.9 kB Download
md5:62f6bf636d2323647a6d0d1f03b0a1bf
3.7 kB Preview Download
md5:42a66c224eab8fc1b0dd4a71cccfb0e8
2.6 kB Preview Download
md5:0736614441a3d7a1a91a4ce2c74a8155
3.1 kB Preview Download
md5:15770795a68576098b0ed7418041bfc8
3.2 kB Preview Download
md5:39cbbb9e2afd5512ede66e06b78b3363
1.2 MB Download
md5:8fc77b94cade732be5ea76ec81badd91
40.1 kB Download
md5:88da006dd0d2810285b239e18320f20a
71.5 MB Download
md5:3a5ce25e99509ec02a278f6329404456
12.5 kB Download
md5:46f0b8499fb4f72a36ad83d2d41e02d7
45.7 kB Download

Additional details

Funding

Swiss National Science Foundation
NCCR Microbiomes (phase II) 225148

Dates

Submitted
2024-11