CHROM,POS,TYPE,REF,ALT,EVIDENCE,FTYPE,STRAND,NT_POS,AA_POS,EFFECT,LOCUS_TAG,GENE,PRODUCT
LS999205,19321,del,AG,A,A:20 AG:0,CDS,+,550/888,184/295,frameshift_variant c.550delG p.Ala184fs,PPRCHA0_0018,,putative lipid A biosynthesis lauroyl acyltransferase
LS999205,288360,del,TG,T,T:20 TG:0,CDS,-,289/762,97/253,frameshift_variant c.289delC p.His97fs,PPRCHA0_0250,,"polar amino acid ABC transporter, ATP-binding protein"
LS999205,549630,del,CT,C,C:19 CT:0,CDS,-,1011/1674,337/557,frameshift_variant c.1011delA p.Glu338fs,PPRCHA0_0480,,AMP-binding domain protein
LS999205,992871,del,CT,C,C:19 CT:0,CDS,+,1815/2031,605/676,frameshift_variant c.1815delT p.Ala607fs,PPRCHA0_0862,,methyl-accepting chemotaxis protein
LS999205,1341778,ins,G,GT,GT:18 G:0,CDS,-,669/2592,223/863,frameshift_variant c.669dupA p.Pro224fs,PPRCHA0_1173,,"glycosyltransferase, group 2 family"
LS999205,1438490,del,TA,T,T:20 TA:0
LS999205,1443010,del,CA,C,C:20 CA:0
LS999205,1475423,del,CT,C,C:19 CT:0
LS999205,2304317,del,TG,T,T:20 TG:0,CDS,+,727/861,243/286,frameshift_variant c.727delG p.Glu243fs,PPRCHA0_2071,,"transcriptional regulator, LysR family"
LS999205,2310434,ins,G,GT,GT:19 G:0
LS999205,2648247,del,CG,C,C:19 CG:0,CDS,-,693/1107,231/368,frameshift_variant c.693delC p.Glu232fs,PPRCHA0_2373,,hypothetical protein
LS999205,2711049,del,AC,A,A:19 AC:0,CDS,+,34/462,12/153,frameshift_variant c.34delC p.Val13fs,PPRCHA0_2439,,putative membrane protein
LS999205,2865569,del,AT,A,A:18 AT:0
LS999205,4301100,ins,G,GCCC,GCCC:18 G:0
LS999205,4440191,del,CA,C,C:18 CA:0
LS999205,4442073,ins,G,GT,GT:20 G:0
LS999205,4957983,del,TA,T,T:19 TA:0
LS999205,5248148,ins,C,CGT,CGT:19 C:0,CDS,+,145/744,49/247,frameshift_variant c.143_144dupTG p.Arg49fs,PPRCHA0_4628,,NAD dependent epimerase/dehydratase family protein
LS999205,5257681,del,GC,G,G:20 GC:0
LS999205,5753680,del,CT,C,C:18 CT:0,CDS,-,1413/1728,471/575,frameshift_variant c.1413delA p.Glu472fs,PPRCHA0_5110,,hypothetical protein
LS999205,5789518,del,GC,G,G:20 GC:0,CDS,-,261/1317,87/438,frameshift_variant c.261delG p.Arg88fs,PPRCHA0_5145,,methyl-accepting chemotaxis transducer/sensory box protein
LS999205,6181718,snp,C,T,T:12 C:0
LS999205,6234502,del,AC,A,A:20 AC:0,CDS,+,885/1275,295/424,frameshift_variant c.885delC p.Ser296fs,PPRCHA0_5553,,hypothetical protein
LS999205,6314148,del,TC,T,T:20 TC:0
LS999205,6516690,del,CT,C,C:19 CT:0
LS999205,6544004,del,AT,A,A:20 AT:0
LS999205,6652387,del,TC,T,T:18 TC:0
LS999205,6671173,snp,A,C,C:20 A:0,CDS,+,1282/1398,428/465,missense_variant c.1282A>C p.Thr428Pro,PPRCHA0_5962,algC,phosphomannomutase/phosphoglucomutase