Published September 27, 2022
| Version 0.1
Dataset
Open
Datasets for napari-lattice: Lattice Lightsheet Analysis
- 1. Walter and Eliza Hall Institute of Medical Rsesearch
Description
Sample data acquired using the Zeiss lattice lightsheet microscope. The images are of human red blood cells acquired in the 488 channel. This dataset is associated with the software napari-lattice, which is a plugin for napari, an n-dimensional viewer in Python.
Dimensions are in the format (Time, Channel, Z, Y, X)
- RBC_full_one_timepoint.czi: (1, 1, 834, 300, 2048)
- RBC_full_time_series.czi: (3, 1, 834, 300, 2048)
- RBC_medium_LLSZ.czi: (5, 1, 834, 297, 279)
- RBC_tiny.czi: (1, 1, 834, 118, 209)
Voxel sizes in z, y and x respectively: ( 0.3, 0.1449922, 0.1449922)
napari-lattice can process lattice lightsheet datasets skewed in the X or Y direction, and you can also create full analysis workflows in napari. For more information:
https://github.com/BioimageAnalysisCoreWEHI/napari_lattice
Files
Files
(4.9 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:31e59fb70e68dc432dbd3ffe4314f3ff
|
1.0 GB | Download |
|
md5:f4f11041b3c444962c3bb263cf09f0a3
|
3.1 GB | Download |
|
md5:9cb195ee9a303ad776da1d7e585ffe9d
|
703.2 MB | Download |
|
md5:e1b7f9a88b0008d89a9ce07c4b7a48fe
|
48.9 MB | Download |
Additional details
References
- Geoghegan, N.D., Evelyn, C., Whitehead, L.W. et al. 4D analysis of malaria parasite invasion offers insights into erythrocyte membrane remodeling and parasitophorous vacuole formation. Nat Commun 12, 3620 (2021). https://doi.org/10.1038/s41467-021-23626-7