D-COVRIN.2.1.2 - Report on the comparisons of variants and reference sample exchange - Bioinformatics Ring Trial
Creators
- 1. National Institute of Health Dr. Ricardo Jorge (INSA), Portugal
- 2. Istituto Superiore di Sanità (ISS), Italy
Description
JIP06-COVID19-COVRIN-WP2-T2.1 Genome analyses
JIP06-COVID19-COVRIN-WP2-ST2.1.2 Harmonisation sampling and methods NGS
Deliverable D-COVRIN.2.1.2 - Report on the comparisons of variants and reference sample exchange
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T2.1 leader: Vítor Borges (INSA, 36)
ST2.1.2 leader: Gabriele Vaccari (ISS, 27)
Task participants: All partners
Partners participating in Bioinformatics Ring Trial: INSA (36), ISS (27), ANSES (01), APHA (21), FLI (10), INIAV (35), IZSAM (28), Sciensano (04)
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This deliverable describes the activities and outcomes of the COVRIN WP2-T2.1 sub-task ST2.1.2 (Harmonisation sampling and methods NGS), in which a Bioinformatics Ring Trial was carried out in order to assess the reproducibility of bioinformatics pipelines (i.e., from raw reads to consensus sequences, using reference-based mapping) currently being applied for genome analyses of SARS-CoV-2 (and other coronaviruses - CoV) in the partners institutes.
Files
D-COVRIN.2.1.2.pdf
Files
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