Published September 7, 2021 | Version v1
Preprint Open

Towards a Global Public Repository of Community Protocols to encourage Best Practices in Biomolecular Ocean Observing and Research

Creators

  • 1. School of Ocean and Earth Science, University of Southampton, Southampton, UK
  • 2. Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
  • 3. Helmholtz Metadata Collaboration, GEOMAR, Kiel, Germany
  • 4. Gump South Pacific Research Station, University of California Berkeley, Moorea, French Polynesia
  • 5. Fisheries and Oceans Canada, Bedford Institute of Oceanography, Dartmouth, Nova Scotia, Canada
  • 6. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
  • 7. Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Heraklion, Greece
  • 8. Monterey Bay Aquarium Research Institute, Moss Landing, California, USA
  • 9. Royal Belgian Institute of Natural Sciences, Brussels, Belgium
  • 10. Southern California Coastal Water Research Project, Costa Mesa, California, USA
  • 11. Commonwealth Scientific and Industrial Research Organisation, Oceans and Atmosphere, Hobart, TAS, Australia
  • 12. University of New Hampshire, Durham, NH, USA

Description

Biomolecular ocean observing and research is a rapidly evolving field that uses omics approaches to describe biodiversity at its foundational level, giving insight into the structure and function of marine ecosystems over time and space. To achieve a global ocean biomolecular observing network (OBON) for the UN Decade of Ocean Science for Sustainable Development and beyond, research groups will need a system to effectively share, discover, and compare omic practices and protocols. While numerous informatic tools and standards exist, there is currently no global, publicly-supported platform specifically designed for sharing marine omics (or any omics) protocols across the entire value-chain from initiating a study to the publication and use of its results. Towards that goal, we propose the development of the Minimum Information for an Omic Protocol (MIOP), a community-developed guide of curated, standardized metadata tags and categories that will orient protocols in the value-chain for the facilitated, structured, and user-driven discovery of suitable protocol suites on the Ocean Best Practices System. Users can annotate their protocols with these tags, or use them as search criteria to find appropriate protocols. Implementing such a curated repository is an essential step towards establishing best practices. Sharing protocols and encouraging comparisons through this repository will be the first steps towards designing a decision tree to guide users to community endorsed best practices.

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