Published January 17, 2024
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Lemming Mesocosm (Denmark): in-situ fluorescence chlorophyll-a calibration, analysis code
Description
These analysis codes are basically used for testing and calibrating high-frequency in-situ chlorophyll-a fluorescence sensor (Turner Designs, Cyclops 7F) data, collected between 2018 and 2020 in Lemming mesocosm site, Denmark. At this mesocosm site there are 24 tanks with 2 nutrient and 3 temperature treatments (2x3 factorial design).
These analysis codes are used for cleaning in-situ fluorescence data from 24 chlorophyll-a and 12 phycocyanin sensors, conducting various tests for these fluorescence sensors and for calibrating in-situ chlorophyll-a fluorescence data against in-vitro chlorophyll-a data.
In the uploaded folder there are three .R files
- LemCP_InSitu_DataClean
- Code for in-situ chlorophyll-a and phycocyanin fluorescence data cleaning
- LemCP_DataWork_Graphs
- Codes for organizing all the datasets, calibrating in-situ fluorescence sensors and plotting figures
- LemCP_OutliersTest
- This is an example code, showing how the outliers in chlorophyll-a data were defined.
Files
LemCP_codes_folderStructure.jpg
Files
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Additional details
Identifiers
Related works
- Is supplement to
- Preprint: 10.12688/openreseurope.17146.2 (DOI)
Funding
- European Commission
- AQUACOSM - Network of Leading European AQUAtic MesoCOSM Facilities Connecting Mountains to Oceans from the Arctic to the Mediterranean 731065
- European Commission
- AQUACOSM-plus - Network of Leading Ecosystem Scale Experimental AQUAtic MesoCOSM Facilities Connecting Rivers, Lakes, Estuaries and Oceans in Europe and beyond 871081
- European Commission
- PONDERFUL - POND Ecosystems for Resilient FUture Landscapes in a changing climate 869296