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Published March 11, 2024 | Version v2.8.0
Software Open

shenwei356/seqkit: SeqKit v2.8.0

  • 1. Chongqing Medical University, China
  • 2. @nanoporetech
  • 3. @nanoporetech, @epi2me-labs
  • 4. EMBL-EBI
  • 5. @neherlab @nextstrain
  • 6. Sun Yat-sen University Cancer center
  • 7. Karolinska University Hospital
  • 8. Scripps Institution for Oceanography
  • 9. @meetup

Description

Changelog

  • SeqKit v2.8.0 - 2024-03-11
    • seqkit stats:
      • Add column N50_num, an alias of L50, #15.
    • seqkit seq/locate/fish/watch:
      • Removing the flag -V/--validate-seq-length. Now the whole sequence will be checked if -v/--validate-seq is given.
    • seqkit amplicon:
      • Fix the speed problem, introduced in v2.7.0. #439.
      • Slightly faster by reusing objects.
    • seqkit seq:
      • Change the threshold sequence length for parallelizing complement sequence computation, 1kb->1Mb.

Links

OS |Arch |File, 中国镜像 |Download Count :------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Linux |32-bit |seqkit_linux_386.tar.gz, <br/> 中国镜像 | Linux |64-bit|seqkit_linux_amd64.tar.gz, <br/> 中国镜像 | Linux |arm64 |seqkit_linux_arm64.tar.gz, <br/> 中国镜像 | macOS |64-bit|seqkit_darwin_amd64.tar.gz, <br/> 中国镜像 | macOS |arm64 |seqkit_darwin_arm64.tar.gz, <br/> 中国镜像 | Windows|32-bit |seqkit_windows_386.exe.tar.gz, <br/> 中国镜像 | Windows|64-bit|seqkit_windows_amd64.exe.tar.gz, <br/> 中国镜像|

Notes

  • please open an issuse to request binaries for other platforms.
  • run seqkit version to check update !!!
  • run seqkit genautocomplete to update shell autocompletion script !!!

Please cite: W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.

Files

shenwei356/seqkit-v2.8.0.zip

Files (34.1 MB)

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Additional details

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