shenwei356/seqkit: SeqKit v2.8.0

Changelog

• SeqKit v2.8.0 - 2024-03-11
  • seqkit stats:
    • Add column N50_num, an alias of L50, #15.
  • seqkit seq/locate/fish/watch:
    • Removing the flag -V/--validate-seq-length. Now the whole sequence will be checked if -v/--validate-seq is given.
  • seqkit amplicon:
    • Fix the speed problem, introduced in v2.7.0. #439.
    • Slightly faster by reusing objects.
  • seqkit seq:
    • Change the threshold sequence length for parallelizing complement sequence computation, 1kb->1Mb.

Links

OS |Arch |File, 中国镜像 |Download Count :------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Linux |32-bit |seqkit_linux_386.tar.gz, <br/> 中国镜像 | Linux |64-bit|seqkit_linux_amd64.tar.gz, <br/> 中国镜像 | Linux |arm64 |seqkit_linux_arm64.tar.gz, <br/> 中国镜像 | macOS |64-bit|seqkit_darwin_amd64.tar.gz, <br/> 中国镜像 | macOS |arm64 |seqkit_darwin_arm64.tar.gz, <br/> 中国镜像 | Windows|32-bit |seqkit_windows_386.exe.tar.gz, <br/> 中国镜像 | Windows|64-bit|seqkit_windows_amd64.exe.tar.gz, <br/> 中国镜像|

Notes

• please open an issuse to request binaries for other platforms.
• run seqkit version to check update !!!
• run seqkit genautocomplete to update shell autocompletion script !!!

Please cite: W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.