shenwei356/seqkit: SeqKit v2.8.0
Creators
- 1. Chongqing Medical University, China
- 2. @nanoporetech
- 3. @nanoporetech, @epi2me-labs
- 4. EMBL-EBI
- 5. @neherlab @nextstrain
- 6. Sun Yat-sen University Cancer center
- 7. Karolinska University Hospital
- 8. Scripps Institution for Oceanography
- 9. @meetup
Description
Changelog
- SeqKit v2.8.0 - 2024-03-11
seqkit stats
:- Add column
N50_num
, an alias of L50, #15.
- Add column
seqkit seq/locate/fish/watch
:- Removing the flag
-V/--validate-seq-length
. Now the whole sequence will be checked if-v/--validate-seq
is given.
- Removing the flag
seqkit amplicon
:- Fix the speed problem, introduced in v2.7.0. #439.
- Slightly faster by reusing objects.
seqkit seq
:- Change the threshold sequence length for parallelizing complement sequence computation, 1kb->1Mb.
Links
OS |Arch |File, 中国镜像 |Download Count :------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Linux |32-bit |seqkit_linux_386.tar.gz, <br/> 中国镜像 | Linux |64-bit|seqkit_linux_amd64.tar.gz, <br/> 中国镜像 | Linux |arm64 |seqkit_linux_arm64.tar.gz, <br/> 中国镜像 | macOS |64-bit|seqkit_darwin_amd64.tar.gz, <br/> 中国镜像 | macOS |arm64 |seqkit_darwin_arm64.tar.gz, <br/> 中国镜像 | Windows|32-bit |seqkit_windows_386.exe.tar.gz, <br/> 中国镜像 | Windows|64-bit|seqkit_windows_amd64.exe.tar.gz, <br/> 中国镜像|
Notes
- please open an issuse to request binaries for other platforms.
- run
seqkit version
to check update !!! - run
seqkit genautocomplete
to update shell autocompletion script !!!
Please cite: W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.
Files
shenwei356/seqkit-v2.8.0.zip
Files
(34.1 MB)
Name | Size | Download all |
---|---|---|
md5:32be217987b2690505403f8283824c8f
|
34.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/shenwei356/seqkit/tree/v2.8.0 (URL)