shenwei356/seqkit-v2.8.0.zip
shenwei356-seqkit-9f6b088
.github
issue_template.md
1.2 kB
.gitignore
519 Bytes
.travis.yml
786 Bytes
CHANGELOG.md
61.9 kB
Dockerfile
1.4 kB
LICENSE
1.1 kB
README-v0.3.1.1.md
4.7 kB
README.md
14.8 kB
benchmark
README.md
3.6 kB
benchmark.5tests.tsv
2.7 kB
benchmark.5tests.tsv.C.png
156.5 kB
benchmark.5tests.tsv.png
312.1 kB
plot.R
4.8 kB
plot.sh
239 Bytes
revcom_biogo
2.1 MB
revcom_biogo.go
771 Bytes
run.pl
4.0 kB
run_benchmark_01_revcom.sh
972 Bytes
run_benchmark_02_exctact_by_id_list.sh
1.0 kB
run_benchmark_03_sampling.sh
1.8 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh
618 Bytes
run_benchmark_05_subseq_with_bed.sh
704 Bytes
seqkit_file_size
benchmark.seqkit.files_size.tsv
1.3 kB
benchmark.seqkit.files_size.tsv.png
162.6 kB
plot.R
3.9 kB
plot.sh
80 Bytes
prepare.sh
200 Bytes
run_benchmark_01_revcom.sh
249 Bytes
run_benchmark_04_remove_duplicated_seqs_by_seq.sh
275 Bytes
run_test_seqkit_01_shuffle.sh
433 Bytes
run_test_seqkit_02_sort.sh
436 Bytes
tmp_result
run_benchmark_01_revcom.sh.round1.out
377 Bytes
run_benchmark_01_revcom.sh.round2.out
377 Bytes
run_benchmark_01_revcom.sh.round3.out
377 Bytes
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round1.out
626 Bytes
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round2.out
626 Bytes
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round3.out
626 Bytes
run_test_seqkit_01_shuffle.sh.round1.out
1.8 kB
run_test_seqkit_01_shuffle.sh.round2.out
1.8 kB
run_test_seqkit_01_shuffle.sh.round3.out
1.8 kB
run_test_seqkit_02_sort.sh.round1.out
1.9 kB
run_test_seqkit_02_sort.sh.round2.out
1.9 kB
run_test_seqkit_02_sort.sh.round3.out
1.9 kB
seqkit_multi_threads
benchmark.5tests.tsv
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benchmark.5tests.tsv.png
209.6 kB
plot.R
4.4 kB
plot.sh
159 Bytes
run.pl
9 Bytes
run_benchmark_01_revcom.sh
441 Bytes
run_benchmark_02_exctact_by_id_list.sh
523 Bytes
run_benchmark_03_sampling.sh
896 Bytes
run_benchmark_04_remove_duplicated_seqs_by_seq.sh
476 Bytes
run_benchmark_05_subseq_with_bed.sh
592 Bytes
run_test_seqkit_01_shuffle.sh
655 Bytes
run_test_seqkit_02_sort.sh
663 Bytes
tmp_result
run_benchmark_01_revcom.sh.round1.out
768 Bytes
run_benchmark_01_revcom.sh.round2.out
768 Bytes
run_benchmark_01_revcom.sh.round3.out
769 Bytes
run_benchmark_02_exctact_by_id_list.sh.round1.out
1.0 kB
run_benchmark_02_exctact_by_id_list.sh.round2.out
1.0 kB
run_benchmark_02_exctact_by_id_list.sh.round3.out
1.0 kB
run_benchmark_03_sampling.sh.round1.out
3.2 kB
run_benchmark_03_sampling.sh.round2.out
3.2 kB
run_benchmark_03_sampling.sh.round3.out
3.2 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round1.out
1.6 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round2.out
1.6 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round3.out
1.6 kB
run_benchmark_05_subseq_with_bed.sh.round1.out
646 Bytes
run_benchmark_05_subseq_with_bed.sh.round2.out
646 Bytes
run_benchmark_05_subseq_with_bed.sh.round3.out
646 Bytes
tmp_result
run_benchmark_01_revcom.sh.round1.out
3.5 kB
run_benchmark_01_revcom.sh.round2.out
3.5 kB
run_benchmark_01_revcom.sh.round3.out
3.5 kB
run_benchmark_02_exctact_by_id_list.sh.round1.out
17.2 kB
run_benchmark_02_exctact_by_id_list.sh.round2.out
17.2 kB
run_benchmark_02_exctact_by_id_list.sh.round3.out
17.2 kB
run_benchmark_03_sampling.sh.round1.out
3.7 kB
run_benchmark_03_sampling.sh.round2.out
3.7 kB
run_benchmark_03_sampling.sh.round3.out
3.7 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round1.out
2.3 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round2.out
2.3 kB
run_benchmark_04_remove_duplicated_seqs_by_seq.sh.round3.out
2.3 kB
run_benchmark_05_subseq_with_bed.sh.round1.out
783 Bytes
run_benchmark_05_subseq_with_bed.sh.round2.out
783 Bytes
run_benchmark_05_subseq_with_bed.sh.round3.out
783 Bytes
doc
docs
benchmark
benchmark.5tests.tsv.C.png
45 Bytes
benchmark.5tests.tsv.png
43 Bytes
seqkit_file_size
benchmark.seqkit.files_size.tsv.png
74 Bytes
seqkit_multi_threads
benchmark.5tests.tsv.png
67 Bytes
benchmark.md
10.9 kB
bioinf.md
72 Bytes
citations.csv
22.7 kB
commands.csv
4.8 kB
download.md
71.0 kB
downloads.tsv
5.3 kB
faq.md
12.7 kB
features_overview.tsv
1.1 kB
files
PAO1
PAO1.fasta
6.4 MB
PAO1.gb
4.1 MB
PAO1.gtf
1.8 MB
motif_distribution.png
232.4 kB
motifs.fa
36 Bytes
plot_motif_distribution.R
1.8 kB
favicon.ico
1.1 kB
hairpin
hairpin.fa.gz
1.2 MB
hairpin.id_hsa.fa.gz.lenbox.png
6.6 kB
hairpin.id_hsa.fa.gz.lendist.png
17.2 kB
ns.png
7.4 kB
pos.png
109.5 kB
sequence-parsing-strategies.png
109.8 kB
usage
watch.p0.png
20.9 kB
watch.p1.png
31.3 kB
index.md
14.8 kB
note.md
6.0 kB
tutorial.md
22.3 kB
usage.md
151.7 kB
yanlilab.md
74 Bytes
mkdocs.yml
720 Bytes
go.mod
2.5 kB
go.sum
29.1 kB
seqkit
cmd
amplicon.go
27.5 kB
bam.go
33.4 kB
bam_toolbox.go
18.9 kB
bed.go
4.0 kB
common.go
20.7 kB
concat.go
7.1 kB
convert.go
10.9 kB
dup.go
2.7 kB
fa2fq.go
4.3 kB
faidx.go
11.0 kB
fish.go
12.0 kB
fq2fa.go
2.5 kB
fx2tab.go
8.1 kB
genautocomplete.go
3.3 kB
grep.go
21.8 kB
head-genome.go
4.5 kB
head.go
2.8 kB
helper.go
14.9 kB
locate.go
27.4 kB
logging.go
1.2 kB
merge-slides.go
6.4 kB
mutate.go
10.8 kB
pair.go
10.4 kB
pid_alive_unix.go
187 Bytes
pid_alive_windows.go
157 Bytes
range.go
6.9 kB
rename.go
5.9 kB
replace.go
16.1 kB
restart.go
4.0 kB
rmdup.go
6.6 kB
root.go
6.9 kB
sample.go
6.0 kB
sana.go
18.5 kB
scat.go
15.4 kB
seq.go
13.3 kB
seq_detect.go
11.5 kB
shuffle.go
7.3 kB
sliding.go
4.9 kB
sort.go
14.7 kB
split.go
29.5 kB
split2.go
13.0 kB
stat.go
18.8 kB
subseq.go
18.8 kB
sum.go
15.2 kB
tab2fx.go
3.9 kB
translate.go
10.2 kB
util.go
12.7 kB
version.go
2.4 kB
watch.go
7.9 kB
main.go
2.2 kB
packaging.sh
408 Bytes
tests
Illimina1.5.fq
302 Bytes
Illimina1.8.fq.gz
866.7 kB
Lactococcus-lactis-phage-BK5-T-ORF25.fasta
291 Bytes
SIRV_150601a.fasta
225.9 kB
a.fa
27 Bytes
b.fa
18 Bytes
blank.fx
2 Bytes
blank1.fx
1 Byte
c.fa
18 Bytes
common_a.fasta
86 Bytes
common_b.fasta
58 Bytes
common_c.fasta
86 Bytes
contigs.fa
154 Bytes
d.fq
19 Bytes
empty.fx
0 Bytes
examples
bam_tool_acc_stats.yml
32 Bytes
bam_tool_aln_context.yml
173 Bytes
bam_tool_dump.yml
369 Bytes
bam_tool_pipeline.yml
558 Bytes
hairpin.fa
4.7 MB
hairpin.fa.fai
854.7 kB
hairpin.fa.gz
1.2 MB
hairpin.fa.seqkit.fai
2.2 MB
hairpin.fa.xz
814.2 kB
hairpin.fa.zst
1.2 MB
hsa.fa
110 Bytes
mature.fa.gz
590.9 kB
miRNA.diff.gz
57.2 kB
mouse-p53-cds.fna
1.3 kB
nanopore.fq.gz
1.8 MB
pcs109_5k.bam
5.2 MB
pcs109_5k.bam.bai
5.5 kB
pcs109_5k.fq
9.2 MB
pcs109_5k_bam_NanoPlot.tsv
382.2 kB
pcs109_5k_bam_alignment_length.tsv
280.7 kB
pcs109_5k_bam_soft_clips_tab.tsv
227.0 kB
pcs109_5k_fish_regression.tsv
1.1 kB
pcs109_5k_fq_NanoPlot.tsv
66.3 kB
pcs109_5k_prim.bam
4.4 MB
pcs109_5k_prim.bam.bai
5.5 kB
pcs109_5k_prim_bam_NanoPplot.tsv
373.1 kB
pcs109_5k_spliced.bam
4.5 MB
pcs109_5k_spliced.bam.bai
784 Bytes
primers.tsv
90 Bytes
reads_1.fq.gz
303.3 kB
reads_2.fq.gz
276.3 kB
sana_ground.fas
7.2 kB
sana_ground.fq
12.9 kB
scat_test.tsv
16.8 kB
seqs4amplicon.fa
47 Bytes
sliding_windows.tsv
389 Bytes
test.sh
21.5 kB
titin.fas
18.5 kB
virus-A.fasta
66 Bytes
virus-B.fasta
73 Bytes
virus-C.fasta
76 Bytes
virus-D.fasta
83 Bytes
viruses.fasta
298 Bytes
viruses.shuffled.fasta
256 Bytes