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Published October 23, 2023 | Version v2.8.5
Software Open

SysBioChalmers/RAVEN: v2.8.5

Creators

  • 1. Chalmers University of Technology
  • 2. EV Biotech
  • 3. BioInnovation Institute
  • 4. Chr. Hansen
  • 5. @SysBioChalmers
  • 6. Aalto University
  • 7. Gitter
  • 8. KTH Royal Institute of Technology / Science For Life Laboratory

Description

  • feat:
    • Distribute SoPlex binary for Windows with RAVEN, as another open-source alternative, slower than glpk, but suitable for MILP. Installation instructions are updated.
    • readYAMLmodel should always make model.c-field, even if no objective function is specified (solves #509).
    • standardizeGrRules should throw error if no grRules field is found.
  • refactor:
    • addRxnsGenesMets more detailed error message if reactions cannot be found.
    • getAllowedBounds use progressbar for reporting status.

Files

SysBioChalmers/RAVEN-v2.8.5.zip

Files (265.0 MB)

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md5:efc017f5ebbe22e60634e2b07e13ae40
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Additional details

Related works

Is supplement to
Software: https://github.com/SysBioChalmers/RAVEN/tree/v2.8.5 (URL)