Published September 4, 2025 | Version v2.10.4
Software Open

SysBioChalmers/RAVEN: v2.10.4

Creators

  • 1. Chalmers University of Technology
  • 2. TMY Life
  • 3. AIxBIO
  • 4. BioInnovation Institute
  • 5. ELIXIR Europe
  • 6. Chr. Hansen
  • 7. @SysBioChalmers
  • 8. Aalto University
  • 9. Gitter
  • 10. KTH Royal Institute of Technology / Science For Life Laboratory
  • 11. @merckgroup

Description

  • fix:
    • importModel prevent colon operands warning
    • importModel parsing of model notes in MATLAB R2025a (solves #586)
    • randomSampling uses real reaction bounds and not the model.rev field to identify reversible reactions, and filters from goodRxns those reactions that cannot carry flux
  • feature:
    • setParam checks if the new LB and UB values are not invalid
    • randomSampling recognizes if a model is a GECKO v3+ ecModel, in which case the usage_prot reactions are not sampled
  • refactor:
    • importModel parsing of LB and UB values, minor speed improvements
  • documentation:
    • remove traces of getMILPParams, which has been obsolete since 2.7.10

Files

SysBioChalmers/RAVEN-v2.10.4.zip

Files (267.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/SysBioChalmers/RAVEN/tree/v2.10.4 (URL)

Software

Repository URL
https://github.com/SysBioChalmers/RAVEN