Published October 24, 2025 | Version v2.10.5
Software Open

SysBioChalmers/RAVEN: v2.10.5

Creators

  • 1. Chalmers University of Technology
  • 2. TMY Life
  • 3. AIxBIO
  • 4. BioInnovation Institute
  • 5. ELIXIR Europe
  • 6. Chr. Hansen
  • 7. @SysBioChalmers
  • 8. Aalto University
  • 9. Gitter
  • 10. KTH Royal Institute of Technology / Science For Life Laboratory
  • 11. @merckgroup

Description

  • fix:
    • importModel parsing of model notes in MATLAB R2025a (solves #586)
    • readYAMLmodel can read files where entries were broken over more than 2 lines.
    • readYAMLmodel recognizes '' as an empty string.
  • doc:
    • getExchangeRxns correct 'out' flag definition
  • refactor:
    • setParam and solveLP speed improvements
    • optimizeProb parses Threads=1 to gurobi if run in parallel
  • feat:
    • checkModelStruct will throw error if a grRules entry starts/end with AND/OR, example: or geneA and geneB

Files

SysBioChalmers/RAVEN-v2.10.5.zip

Files (267.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/SysBioChalmers/RAVEN/tree/v2.10.5 (URL)

Software

Repository URL
https://github.com/SysBioChalmers/RAVEN