Validation of de novo designed water-soluble and transmembrane proteins by in silico folding and melting

Published June 23, 2023 | Version v1

Dataset Restricted

1. Structural Biology Brussel, Vrije Universiteit Brussel, Brussels, Belgium.
2. John Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA, USA

Here are all of the datasets generated and analysed during this study.

Here is a breakdown of their content:

8_stranded_transmembrane_barrels.zip - raw data from the Alphafold (3 and 48 recycles), ESM fold and raptor predictions of the 8 stranded beta barrels. A file with all the sequences is also given
12_stranded_transmembrane_barrels.zip - raw data from the Alphafold and ESMfold predictions of the 12 stranded beta barrels. A file with all the sequences is also given
water_soluble_barrels.zip - raw data from the Alphafold and ESMfold predictions of the water soluble beta barrels. A file with all the sequences is also given

ESMfold_masking_exp.tar - this tar file contains all the ESMfold masking experiments performed to the water-soluble barrels as well as the 8 and 12-stranded transmembrane barrels. Inside there are zipped datasets for each masking experiment
ziped_raw_csv_files.zip - raw csv files with all the data necessary to analyse the figures
analysis_notebooks.zip - Jupyter notebooks used to analyse the output prediction data for all figures

The record is publicly accessible, but files are restricted to users with access.

Description