Published November 2, 2022 | Version v1
Presentation Open

Intro to R and Open Science Practices for Biologists (Arabic)

  • 1. Bioinformatics Core of the San Raffaele Telethon Institute
  • 2. University of Liverpool
  • 3. Brac University
  • 4. Newcastle University
  • 5. King Faisal University

Description

This is a 3-day hands-on Carpentries workshop delivered to sFDA staff by introducing R and Open Science. It focuses on data wrangling and visualisation with Tidyverse and ggplot2 and how to use packages from Bioconductor to analyse biological dataIt also introduces best practices in open science and Reproducibility using git and GitHub. 

The workshop is organised by the Open Science Community Saudi Arabia using materials from intro to R and RStudio for Genomics and Introduction to Open Data Science with R.

The workshop was delivered by: Dr. Monah Abou Alezz, Annajiat Alim Rasel, Mona Alsharif and Abdulrahman Dallak.

Date: 31st of October - 2nd of November 2022 (11:00 am - 2:00pm Riyadh time).

The Slides are divided to 7 sections:

01- Introduction to the Workshop

02- Introduction to Open Science

03- Introduction to R and RStudio

04- Introduction to GitHub

05- Introduction to the VCF dataset

06- Introduction to ggplot2

07- RMarkdown and Summary

The workshop materials associated with the workshop can be found here.

Notes

These are the Slides associated with the Carpentries Workshop delivered by Open Science Community to sFDA staff.

Files

01-Introduction of the workshop.pdf

Files (22.6 MB)

Name Size Download all
md5:7a122a5d9874a386f259bdde2d73f472
4.6 MB Preview Download
md5:628a6be6d9b98e877108e283632ea64d
6.1 MB Preview Download
md5:ac228406330b741bb9737c6be4242d30
726.9 kB Preview Download
md5:7501fc6598b8cb26396f3fabee65f3b6
3.9 MB Preview Download
md5:3d2e6a16f6e4e76d9c8c9d5034e7dfc6
1.8 MB Preview Download
md5:a0c0e7e1117c5fdbf59d0b66e64341eb
782.3 kB Preview Download
md5:5ad89881bc459ba5826d3823b96a0f9d
4.7 MB Preview Download