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Published November 1, 2022 | Version v2.5.0
Software Open

BenLangmead/bowtie2: v2.5.0

Creators

  • 1. Johns Hopkins, McKusick-Nathans Institute of Genetic Medicine
  • 2. Johns Hopkins University
  • 3. San Diego Supercomputing Center
  • 4. University of Texas Southwestern Medical Center
  • 5. @TGAC
  • 6. @bwlang
  • 7. @idiv-biodiversity
  • 8. INRA MetaGenoPolis
  • 9. Whole Biome
  • 10. UCSF
  • 11. @10xGenomics
  • 12. Barnab2Studio
  • 13. @SUSE
  • 14. UCSD - Dept. of Pediatrics
  • 15. @common-workflow-language
  • 16. Wyoming Public Health Laboratory
  • 17. Yale University

Description

  • Overall improvements in the use of prefetch instructions. (contribution by Igor Sfiligoi)
  • Made input/output fully asynchronous by using a dedicated thread. (contribution by Igor Sfiligoi)
  • Added support for AVX2 256-bit instructions with can be enabled by setting the SSE_AXV2 environment variable at compile time. (contribution by Igor Sfiligoi)
  • Fixed an issue causing bowtie2 to crash when processing ZSTD files with high compression ratios.
  • Changed the way that unique alignments are counted in summary message to better match up with filters on SAM output

Files

BenLangmead/bowtie2-v2.5.0.zip

Files (10.7 MB)

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md5:a98fedc53af0ef115c053652b47c754a
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Additional details

Related works

Is supplement to
https://github.com/BenLangmead/bowtie2/tree/v2.5.0 (URL)