Published May 17, 2024
| Version v2.5.4
Software
Open
BenLangmead/bowtie2: v2.5.4
Creators
- ch4rr0
- val1
- Benjamin Langmead2
- Igor Sfiligoi3
- ChristopherWilks
- Daehwan Kim4
- Nicola Soranzo5
- Michael R. Crusoe6
- Christian Brueffer7
- ♫ Christian Krause ♫8
- Jim9
- Jeff Hussmann
- Jun Aruga
- Brad Langhorst10
- Nathan Weeks
- Shaun Jackman11
- Valentin Quiedeville12
- Charles Vejnar13
- Piotr Kubaj14
- Jie Zhu15
- Sameer D'Costa
- Robert A. Petit III16
- Peter Hickey
- Marcin Tojek
- John Marshall
- Daniel McDonald17
- Bernhard M. Wiedemann18
- 1. Johns Hopkins, McKusick-Nathans Institute of Genetic Medicine
- 2. Johns Hopkins University
- 3. San Diego Supercomputing Center
- 4. University of Texas Southwestern Medical Center
- 5. @TGAC
- 6. @common-workflow-language
- 7. @insilicoconsulting
- 8. @idiv-biodiversity
- 9. Pendulum Therapeutics
- 10. @bwlang
- 11. @10xGenomics
- 12. Barnab2Studio
- 13. Yale University
- 14. @3mdeb
- 15. GPG
- 16. Wyoming Public Health Laboratory
- 17. UCSD - Dept. of Pediatrics
- 18. @SUSE
Description
bowtie2
- Added
--sam-opt-config
command line option for toggling SAM Opt flags. See MANUAL for details. - Fixed an issue causing
bowtie2
's memory usage to increase over time when aligning BAM files. - Changed bowtie2 to continue flushing output in the event of a partial write.
- Changed the behavior of
bowtie2-build
to throw an exception if it is unable to write the BWT (.1.bt2, .1.rev.bt2). In prior versionsbowtie2-build
, would silently ignore the error which has led some to report the absence of the BWT files in a "completed" index build. - Reverted the changes made in v2.5.0 that sometimes caused unique concordant alignments to be over-counted.
Files
BenLangmead/bowtie2-v2.5.4.zip
Files
(10.8 MB)
Name | Size | Download all |
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md5:ed8f73cd85c54d573f1479cde151d77e
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10.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/BenLangmead/bowtie2/tree/v2.5.4 (URL)