Dataset for "Selection on old variants drives adaptive radiation of Metrosideros across the Hawaiian archipelago"
Creators
- 1. New York University
- 2. Oxford Nanopore Technologies
- 3. Princeton University
- 4. University of Nevada Las Vegas
Description
combined.ALLCHR.SNP.FILTERED.PASS.vcf.gz
- QC filtered population VCF used for analysis
DADI_INPUT.zip
- dadi analysis input file
GPHOCS_INPUT.txt
- G-PhoCS analysis input file
Metrosideros_polymrpha_incana.scaffolded.fa
- Genome assembly that was Pore-C scaffolded into 11 pseudochromosomes including contigs that were never scaffolded
Metrosideros_polymrpha_incana.scaffolded.gff
- Gene annotation file for Metrosideros_polymrpha_incana.scaffolded.fa
Metrosideros_polymrpha_incana.scaffolded.out
- Repeatmasker result for Metrosideros_polymrpha_incana.scaffolded.fa
Metrosideros_polymrpha_incana.scaffolded_11chr.fa
- The 11 pseudochromosomes for Metrosideros_polymrpha_incana.scaffolded.fa
Metrosideros_polymrpha_incana.unscaffolded.fa
- Genome assembly without scaffolding
PopGenStats.Win10kbp_Step5kbp.csv.gz
- Input file for genomics_general scripts and population genetics analysis
Supplmental_Text_Pore-C_protocol.docx
- Step by step Pore-C protocol
Files
DADI_INPUT.zip
Files
(16.1 GB)
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