Dataset for "Selection on old variants drives adaptive radiation of Metrosideros across the Hawaiian archipelago"

# v1.1 release

Metrosideros_polymrpha_incana.scaffolded.v1.1.fa

- took Metrosideros_polymrpha_incana.scaffolded.fa and conducted 3 rounds of error correction using Illumina sequencing data with Pilon

# v1.0 release

combined.ALLCHR.SNP.FILTERED.PASS.vcf.gz

- QC filtered population VCF used for analysis

DADI_INPUT.zip

- dadi analysis input file

GPHOCS_INPUT.txt

- G-PhoCS analysis input file

Metrosideros_polymrpha_incana.scaffolded.fa

- Genome assembly that was Pore-C scaffolded into 11 pseudochromosomes including contigs that were never scaffolded

Metrosideros_polymrpha_incana.scaffolded.gff

- Gene annotation file for Metrosideros_polymrpha_incana.scaffolded.fa

Metrosideros_polymrpha_incana.scaffolded.out

- Repeatmasker result for Metrosideros_polymrpha_incana.scaffolded.fa

Metrosideros_polymrpha_incana.scaffolded_11chr.fa

- The 11 pseudochromosomes for Metrosideros_polymrpha_incana.scaffolded.fa

Metrosideros_polymrpha_incana.unscaffolded.fa

- Genome assembly without scaffolding

PopGenStats.Win10kbp_Step5kbp.csv.gz

- Input file for genomics_general scripts and population genetics analysis

Supplmental_Text_Pore-C_protocol.docx

- Step by step Pore-C protocol