Published April 15, 2017 | Version v2
Dataset Open

Test dataset for ProteinID

Creators

  • 1. PROBE Dept of Biomedicine
  • 2. Department of Biochemistry, Ghent University, Ghent, Belgium. Department of Medical Protein Research, VIB, Ghent, Belgium.
  • 3. Center for Biological Systems Analysis, University of Freiburg, Habsburger Str. 49, 79104 Freiburg, Germany.

Description

This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044).

A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674).

The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. Both databases are also available with reversed peptide sequences attached as decoys (tag: "DECOY_"). A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material/topics/proteomics/tutorials/database-handling/tutorial.html

Files

Files (1.5 GB)

Name Size Download all
md5:eb7c6a012d821af3799e348d482217f1
13.2 MB Download
md5:4bafd2e20dab0f0ffef3e83c130cc13a
15.1 MB Download
md5:18a8486e6793832174216927218afbc5
26.8 MB Download
md5:6c034205b3cd2fb0e4b85b6b3ec588b5
30.7 MB Download
md5:52b382b09e69e48d4b13e56e3a784163
39.9 MB Download
md5:da9e12e18780eca7a8aafbb5721126f5
340.6 MB Download
md5:70a1b3e804fff4b154e6b9c1eb325c2e
928.1 MB Download
md5:dda4ad1258575de4ed0ec507d27c9fe1
132.0 MB Download

Additional details

Related works

Has part
https://www.ebi.ac.uk/pride/archive/projects/PXD000674 (URL)
Is supplement to
10.1002/pmic.201300488 (DOI)
https://www.ebi.ac.uk/pride/archive/projects/PXD000674 (URL)

References

  • Drexler and Uphoff, Cytotechnology, 2002. doi:10.1023/A:1022913015916