yuyanislearning/mind-snp-nb: A protocol for MIND-S

In this protocol, we utilize one protein, Leucine-rich repeat serine/threonine-protein kinase 2 (LRRK2, UniProt ID: Q5S007), as an example to illustrate the three applications of MIND-S: predicting 26 types of PTMs using the full protein sequence as the input; identifying important amino acids of a specific PTM; and evaluating how mutation will alter the PTM landscape of this protein. Using the same strategy, one can investigate many other proteins and their PTMs of interest.