Published June 29, 2023 | Version v1
Journal article Restricted

Untangling the threads: phylogenetic relationships of threadfins (Percomorphacea: Perciformes: Polynemidae)

Description

David Johnson Aléssio Datovo, Paulo Presti G. (2023): Untangling the threads: phylogenetic relationships of threadfins (Percomorphacea: Perciformes: Polynemidae). Zoological Journal of the Linnean Society 199 (1): 156-205, DOI: 10.1093/zoolinnean/zlad020, URL: http://dx.doi.org/10.1093/zoolinnean/zlad020

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:4631FFBFBA5BFFFCFF96F5631D57FFDE

References

  • Betancur RR, Broughton RE, Wiley EO, et al. The tree of life and a new classification of bony fishes. PLoS Currents 2013;5.
  • Bremm S, von Landesberger T, Hess M, et al. Interactive visual comparison of multiple trees. 2011 IEEE Conference on Visual Analytics Science and Technology (VAST): IEEE, 2011, 31-40.
  • Chen W-J, Bonillo C, Lecointre G. Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Mol. Phylogenet. Evol. 2003;26:262-88.
  • Datovo A, Bockmann FA. Dorsolateral head muscles of the catfish families Nematogenyidae and Trichomycteridae (Siluriformes: Loricarioidei): comparative anatomy and phylogenetic analysis. Neotrop. Ichthyol. 2010;8:193-246.
  • Datovo A, de Pinna MCC, Johnson GD. The infrabranchial musculature and its bearing on the phylogeny of percomorph fishes (Osteichthyes: Teleostei). PLoS One 2014;9:e110129.
  • Datovo A, Rizzato PP. Evolution of the facial musculature in basal ray-finned fishes. Front. Zool. 2018;15:40.
  • Datovo A, Vari RP. The jaw adductor muscle complex in teleostean fishes: evolution, homologies and revised nomenclature (Osteichthyes: Actinopterygii). PLoS One 2013;8:e60846.
  • Escapa IH, Catalano SA. Phylogenetic analysis of Araucariaceae: integrating molecules, morphology, and fossils. Int. J. Plant Sci 2013;174:1153-70.
  • Farris JS. Phenetics in camouflage. Cladistics 1990;6:91-100.
  • Feltes R. Polynemidae, threadfins. In: Carpenter K, Niem V, (ed.). FAO species identification guide for fishery purposes: the living marine resources of the western central Pacific. Rome: FAO, 2001, 3090-3116.
  • Feltes RM. A systematic revision of the Polynemidae (Pisces). Columbus: The Ohio State University, 1986.
  • Feltes RM. Revision of the polynemid fish genus Filimanus, with the description of two new species. Copeia 1991;1991:302-22.
  • Ferrer J, Wingert JM, Malabarba LR. Description of a new species and phylogenetic analysis of the subtribe Cynopoecilina, including continuous characters without discretization (Cyprinodontiformes: Rivulidae). Zool. J.Linn. Soc. 2014;172:846-66.
  • Freihofer WC. Pauerns of ramus lateralis accessorius and their systematic significance in teleostean fishes. Stanford Ichthyol. Bull. 1963;8:80-189.
  • Freihofer WC. Cranial nerves of a percoid fish, Polycentus schomburgkii (family Nandidae), a contribution to the morphology and classification of the order perciformes. Occas. pap. Calif. Acad. Sci 1978;128:1-178.
  • Fricke R, Eschmeyer W, Fong J. Eschmeyer's catalog of fishes: genera/species by family/subfamily. San Francisco: California Academy of Sciences, 2022.
  • Girard MG, Davis MP, Baldwin CC, et al. Molecular phylogeny of the threadfin fishes (Polynemidae) using ultraconserved elements. J. Fish Biol. 2022;100:793-810.
  • Girard MG, Davis MP, Smith WL. The phylogeny of carangiform fishes: morphological and genomic investigations of a new fish clade. Copeia 2020;108:265-98.
  • Giribet G. Stability in phylogenetic formulations and its relationship to nodal support. Syst Biol 2003;52:554-564.
  • Goloboff PA. Estimating character weights during tree search. Cladistics 1993;9:83-91.
  • Goloboff PA. Extended implied weighting. Cladistics 2013;30:260-72.
  • Goloboff PA, Carpenter JM, Arias JS, et al. Weighting against homoplasy improves phylogenetic analysis of morphological data sets. Cladistics 2008;24:758-73.
  • Goloboff PA, Catalano SA. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 2016;32:221-38.
  • Goloboff PA,Farris JS.Methods for quick consensus estimation.Cladistics 2001;17:S26-34.
  • Goloboff PA, Mauoni CI, ºuinteros AS. Continuous characters analyzed as such. Cladistics 2006;22:589-601.
  • Gosline WA. Systematic position and relationships of the percesocine fishes. Pac. Sci. 1962;16:207-17.
  • Gosline WA. The suborders of perciform fishes. Proc. U. S. Natl. Mus. 1968;124:1-78.
  • Gosline WA. Functional morphology and classification of teleostean fishes. Honolulu: University of Hawaii Press, 1971.
  • Grove J, Lavenberg R. The fishes of the Galapagos islands. Stanford: Stanford University Press, 1997.
  • Gusmao-Pompiani P, Oliveira C, ºuagio-Grassiouo I. Spermatozoa ultrastructure in Sciaenidae and Polynemidae (Teleostei: Perciformes) with some consideration on Percoidei spermatozoa ultrastructure. Tissue Cell 2005;37:177-91.
  • Harrington RC, Faircloth BC, Eytan RI, et al. Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. BMC Evol. Biol. 2016;16:224.
  • Hughes LC, Orti G, Huang Y, et al. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proc. Natl. Acad. Sci. U.S.A. 2018;115:6249-54.
  • Johnson GD. Percomorph phylogeny: progress and problems. Bull. Mar. Sci. 1993;52:3-28.
  • Johnson GD, Pauerson C. Percomorph phylogeny: a survey of acanthomorphs and a new proposal. Bull. Mar. Sci. 1993;52:554-626.
  • Kang S. Comparative morphology and phylogenetic relationships of the family Polynemidae (Pisces: Perciformes). Sapporo: Hokkaido University, 2017.
  • Kang S, Imamura H, Kawai T. Morphological evidence supporting the monophyly of the family Polynemidae (Teleostei: Perciformes) and its sister relationship with Sciaenidae. Ichthyol.Res. 2017;65:29-41.
  • Koch NM, Soto IM, Ramirez MJ. First phylogenetic analysis of the family Neriidae (Diptera), with a study on the issue of scaling continuous characters. Cladistics 2014;31:142-65.
  • Kubicek KM, Conway KW. Developmental osteology of Sciaenops ocellatus and Cynoscion nebulosus (Teleostei: Sciaenidae), economically important sciaenids from the western Atlantic. Acta Zool. 2016;97:267-301.
  • Li B, Deuai A, Cruaud C, et al. RNF213, a new nuclear marker for acanthomorph phylogeny. Mol. Phylogenet. Evol 2009;50:345-63.
  • Li C, Ricardo B-R, Smith WL, et al. Monophyly and interrelationships of snook and barramundi (Centropomidae sensu Greenwood) and five new markers for fish phylogenetics. Mol. Phylogenet. Evol 2011;60:463-71.
  • Mirande JM. Weighted parsimony phylogeny of the family Characidae (Teleostei: Characiformes). Cladistics 2009;25:574-613.
  • Mirande JM. Combined phylogeny of ray-finned fishes (Actinopterygii) and the use of morphological characters in large-scale analyses. Cladistics 2017;33:333-50.
  • Miya M, Takeshima H, Endo H, et al. Major pauerns of higher teleostean phylogenies:a new perspective based on 100 complete mitochondrial DNA sequences. Mol. Phylogenet. Evol 2003;26:121-38.
  • Motomura H. Threadfins of the world ( family Polynemidae): an annotated and illustrated catalogue of polynemid species known to date. Rome: Food & Agriculture Organization, 2004.
  • Motomura H, Iwatsuki Y. Review of Polydactylus species (Perciformes: Polynemidae) characterized by a large black anterior lateral line spot, with descriptions of two new species. Ichthyol. Res. 2001;48:337-54.
  • Near TJ, Dornburg A, Eytan RI, et al. Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. Proc. Natl. Acad. Sci. U.S.A. 2013;110:12738-43.
  • Near TJ, Eytan RI, Dornburg A, et al. Resolution of ray-finned fish phylogeny and timing of diversification. Proc. Natl. Acad. Sci. U.S.A. 2012;109:13698-703.
  • Nelson JS. Fishes of the world. Hoboken: Wiley & Sons, 2006.
  • Nelson JS, Grande TC, Wilson MV. Fishes of the world. Hoboken: John Wiley & Sons, 2016.
  • Nixon KC, Carpenter JM. On homology. Cladistics 2011;28:160-9.
  • Pastana MN, Bockmann FA, Datovo A. The cephalic lateral-line system of Characiformes (Teleostei: Ostariophysi): anatomy and phylogenetic implications. Zool. J.Linn. Soc. 2020;189:1-46.
  • Pastana MN, Johnson GD, Datovo A. Comprehensive phenotypic phylogenetic analysis supports the monophyly of stromateiform fishes (Teleostei: Percomorphacea). Zool. J.Linn. Soc. 2022;195:841-963.
  • Presti P, Johnson GD, Datovo A. Anatomy and evolution of the pectoral filaments of threadfins (Polynemidae). Sci. Rep. 2020a;10:1-15.
  • Presti P, Johnson GD, Datovo A. Facial and gill musculature of polynemid fishes, with notes on their possible relationships with sciaenids (Percomorphacea: Perciformes). J.Morphol. 2020b;281:662-75.
  • Rosen DE. The relationships and taxonomic position of the halffleaks, killifishes, silversides, and their relatives. Bull. Am. Mus. Nat. Hist. 1964;127:217-68.
  • Rosen DE.Interrelationships of higher euteleostean fishes.In:Greenwood PH, Miles RS, (ed.). Interrelationships of fishes. London: Academic Press, 1973, 397-513.
  • Sanciangco MD, Carpenter KE, Betancur-R R. Phylogenetic placement of enigmatic percomorph families (Teleostei: Percomorphaceae). Mol. Phylogenet. Evol 2015;94:565-76.
  • Sasaki K. Phylogeny of the family Sciaenidae, with notes on its zoogeography (Teleostei, Perciformes). Mem. Fac. Fish., Hokkaido Univ. 1989;36:1-137.
  • Sereno PC. Logical basis for morphological characters in phylogenetics. Cladistics 2007;23:565-87.
  • Springer VG, Johnson GD. Study of the dorsal gill-arch musculature of teleostome fishes, with special reference to the Actinopterygii. Bull. Biol. Soc. Wash, Smithsonian Institution 2004;11:001-205.
  • Springer VG, Orrell TM. Phylogenetic analysis of the families of acanthomorph fishes based on dorsal gill-arch muscles and skeleton. Washington: Biological Society of Washington, Smithsonian Institution, 2004.
  • de Sylva D. Polynemoidei: development and relationships. In: Moser HG, Richards WJ, Cohen DM, et al., (ed.). Ontogeny and systematics of fishes. Lawrence: American Society of Ichthyologists and Herpetologists, 1984, 540-541.
  • Taylor WR, Van Dyke G. Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study.Cybium 1985;9:107-19.
  • Weitzman SH. The osteology of Brycon meeki, a generalized characid fish, with an osteological definition of the family. Stanford Ichthyologial Bulletin 1962;8:1-77.
  • Wheeler WC. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Systematic Biology 1995;44: 321-331.
  • Wiley E, Johnson GD. A teleost classification based on monophyletic groups. In: Nelson JS, Schultze H-P, Wilson MVH, (ed.). Origin and phylogenetic interrelationships of teleosts. Munich: Friedrich Pfeil, 2010, 123-182.
  • Winterbouom R. A descriptive synonymy of the striated muscles of the Teleostei. Proc. Acad. Nat. Sci. Philadelphia 1974a;125:225-317.
  • Winterbouom R. The familial phylogeny of the Tetraodontiformes (Acanthopterygii: Pisces) as evidenced by their comparative myology. Smithsonian Contributions Zoo. 1974b;155:1-201.
  • Winterbouom R. Myological evidence for the phylogeny of recent genera of surgeonfishes (Percomorpha, Acanthuridae), with comments on the Acanthuroidei. Copeia 1993;1993:21-39.