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Published September 4, 2023 | Version v2.6.0
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sysbio-curie/MaBoSS-env-2.0: MaBoSS performance inprovements, PopMaBoSS beta release

  • 1. Institut Curie
  • 2. Barcelona Supercomputing Center

Description

This release comes with two performance improvements :

  • Evaluation of boolean formulas allowing for short-circuiting of boolean expressions (#11), thanks @exaexa !
  • nodesTransitionRates is now represented as a vector, initialized only once, thanks PopCoE !

Also included is the beta release of PopMaBoSS, a new multicellular pathway modeling framework (thanks @vincent-noel , @gautierstoll @eviara). Manuscript is in preparation ! To test it, run :

cd engine/src
make popmaboss

Examples are available in the engine/examples/popmaboss directory.

This release also include new pypi and conda packages for cmaboss with python 3.11.

Files

sysbio-curie/MaBoSS-env-2.0-v2.6.0.zip

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