Published August 11, 2022
| Version 1.5.0
Dataset
Open
Dataset for demonstration of quantitative label-free imaging with phase and polarization
- 1. Chan Zuckerberg Biohub, San Francisco
Description
The QLIPP_Reconstruction_Resources_20x.zip file contains raw images of mouse brain slice and anisotropic glass target acquired with QLIPP. The file also contains the configuration files to reconstruct the phase, retardance, and orientation from this data with the recOrder pipeline. The tutorial slides for using this dataset for reconstruction can be found here (10.5281/zenodo.5135889).
v1.1.0: Upload two zip files for automated testing of recOrder and waveOrder repositories.
v1.2.0: add pycromanager dataset for testing the reader and converter in waveOrder.
v1.3.0: reduce the size of recOrder test dataset
v 1.4.0: add datasets for new data schema defined for recOrder 0.4.0
v1.5.0: add a dataset that shows images of an embryo
Files
mda_session.zip
Files
(1.2 GB)
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md5:6ae24ddab3e6a62d35b8a20bc6e372c0
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md5:83149ed16a4a5908b48a27bb6cdd8fce
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md5:4207b426223f55a2d5226802f34dbe48
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md5:53ca81fb5a4de4ba1035f36755e9bfdc
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md5:1c7f4215c5a933d87ee65235af726e71
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md5:7580c46c3713750895780dac16a20218
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Additional details
Related works
- Cites
- Presentation: 10.5281/zenodo.5135889 (DOI)
- Is referenced by
- Software: https://github.com/mehta-lab/recOrder (URL)
- Software: https://github.com/mehta-lab/waveOrder (URL)
- Is supplement to
- Journal article: 10.7554/eLife.55502 (DOI)