Published August 24, 2023
| Version 2.4.0
Software
Open
nf-core/scrnaseq: nf-core/scrnaseq 2.4.0 - "Lime Platinum Crab"
Authors/Creators
- Alexander Peltzer1
- Felipe Marques de Almeida2
- Gregor Sturm1
- Olga Botvinnik3
- Kevin Menden4
- nf-core bot
- Adam Talbot5
- Sangram K Sahu6
- Gisela Gabernet
- Pol Alvarez7
- Robert Syme8
- Harshil Patel8
- Tom Kelly9
- heylf
- Maxime U Garcia10
- PETER BAILEY11
- alexthiery1
- Regina Hertfelder Reynolds
- Azedine Zoufir
- Hanka Medova
- Khajidu
- Marcel Ribeiro-Dantas8
- Wei-An Chen
- Jeremy Leipzig12
- Phil Ewels5
- Stan Werbrouck
- ameynert
- shinthor
- Valentin Marteau13
- 1. Boehringer Ingelheim
- 2. University of Brasilia @compgenunb
- 3. @BridgeBioAnalytics
- 4. Robert Bosch GmbH
- 5. @seqeralabs
- 6. @lifebit-ai
- 7. Biomage
- 8. Seqera Labs
- 9. RIKEN IMS; H.U. Group @hugp-ri
- 10. @seqeralabs | Stockholm
- 11. Institute of Cancer Sciences, University of Glasgow
- 12. @TileDB-Inc
- 13. Medical University of Innsbruck
Description
What's Changed
- Fix typo causing empty version imformation for mtx_conversion subworkflow (#254)
- Add
singularity.registry = 'quay.io'and bump NF version to 23.04.0 (#237) - Fixed issue with file collisions while using cellranger (#232)
- Fix issue where multiqc inputs tried to access objects that did not exist (#239)
- Removed
public_aws_ecrprofile (#242) - Include cellranger in MultiQC report (#244)
- Nf-core template update to v2.9 (#245)
- Update cellranger and fastqc module (#246). The updated cellranger module now automatically renames input FASTQ files to match the expected naming conventions.
- @shinthor made their first contribution in https://github.com/nf-core/scrnaseq/pull/254
Files
nf-core/scrnaseq-2.4.0.zip
Files
(23.8 MB)
| Name | Size | Download all |
|---|---|---|
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md5:6cd26966d70e6e44d4da75bf7721f56e
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23.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/scrnaseq/tree/2.4.0 (URL)