DeepSeqDock Supporting Information: Datasets
- 1. Department of Biomedical Engineering, University of South Dakota, Sioux Falls, SD 57107
Description
Exploratory data analysis reports and csv files for datasets used for testing the DeepSeqDock system. Datasets are subsets of the ARCHS4 dataset (see Lachmann, A., Torre, D., Keenan, A.B. et al. Massive mining of publicly available RNA-seq data from human and mouse. Nat Commun 9, 1366 (2018). https://doi.org/10.1038/s41467-018-03751-6; downloaded 11/24/2021). All metadata was mined from https://maayanlab.cloud/archs4/ (11/2021) or NCBI databases.
ARCHS4 RNA-seq processing scripts and web server pages are published under the CC BY-NC-SA 4.0 DEED Attribution-NonCommercial-ShareAlike 4.0 International License. Please see ARCS4 License for more details. As a subset of the ARCHS4 dataset, this dataset is published under the same license.
Dataset are derived from the human_matrix_v10.h5 file, available to download from the Ma'ayan lab.
Notes
Files
Datasets.zip
Files
(181.0 MB)
Additional details
Funding
- U.S. National Science Foundation
- NRT-UtB: University of South Dakota Neuroscience and Nanotechnology Network 1633213
- U.S. National Science Foundation
- RII Track-1: Building on The 2020 Vision: Expanding Research, Education and Innovation in South Dakota 1849206
- U.S. National Science Foundation
- RII Track-2 FEC: Data Driven Material Discovery Center for Bioengineering Innovation 1920954
- U.S. National Science Foundation
- MRI: Acquisition of the Lawrence Supercomputer to Advance Multidisciplinary Research in South Dakota 1626516
- National Institute of Health
- SOUTH DAKOTA BIOMEDICAL RESEARCH INFRASTRUCTURE NETWORK P20GM103443