Published August 11, 2023
| Version 1.1.3
Software
Open
nf-core/funcscan: 1.1.3 - British Beans on Toast (Patch) - 2023-08-11
Creators
- 1. HKI Jena, MPI-EVA Leipzig
- 2. Leibniz Institute for Natural Product Research and Infection Biology, Jena
- 3. QBiC - Uni Tübingen
- 4. @seqeralabs
- 5. Seqera Labs
Description
v1.1.3 - [2023-08-11]
Added
- #290 Merged pipeline template of nf-core/tools version 2.9, updated references. (by @jfy133)
- #285 Use nf-validation for samplesheet checking and added support for
fna.gzinput FASTA files. (by @louperelo, @mirpedrol, @jfy133) - #295 Add Prokka to MultiQC output. (by @louperelo)
Fixed
- #296 Fixed empty output when saving prodigal annotations. (reported by @louperelo, fix by @jasmezz)
- #297 Added check for empty annotation files prior going into screening. (❤️ to @alexhbnr for requesting, added by @jfy133)
- #299 Fixed pigz error with symlinks in Pyrodigal. (by @jasmezz)
- #300 Fixed wrong Pyrodigal channels being submitted to antiSMASH. (reported by Till Bayer, fix by @jasmezz)
- #302 Removed trouble-causing default parameters in json schema. (by @robsyme)
Dependencies
| Tool | Previous version | New version |
|---|---|---|
| comBGC | 0.6.0 | 0.6.1 |
| GECCO | 0.9.2 | 0.9.8 |
Deprecated
Files
nf-core/funcscan-1.1.3.zip
Files
(3.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:608cf8f4d1c8e4cfb61222024e2af29f
|
3.2 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/funcscan/tree/1.1.3 (URL)