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Published July 31, 2023 | Version v3.4.0
Software Open

WGLab/NanoCaller: v3.4.0 Allelic Depth

Creators

  • 1. Children's Hospital of Philadelphia
  • 2. Toyoko

Description

VCF files contain total and strand-specific allele depths for SNP calls from SNP calling models. A new mode for short ONT reads (5-10kbp) added. --phase_qual_score parameter filters out low quality SNP calls from phasing by WhatsHap; these SNP calls are kept in the output, but neither phased nor used for phasing reads.

Files

WGLab/NanoCaller-v3.4.0.zip

Files (22.2 MB)

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md5:62a8d77bb780b86b8c591e9ab426057d
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Additional details

Related works

Is supplement to
https://github.com/WGLab/NanoCaller/tree/v3.4.0 (URL)