Data from: Time dependent niche and fitness differences explain higher order species interactions – experimental evidence in plant-feeding arthropods
- 1. Adam Mickiewicz University in Poznań, Poland
- 2. Institute for Environmental Sciences, RPTU Kaiserslautern-Landau, 76829 Landau, Germany
Description
trajectories.csv (the raw data)
id: replicate identifier
variant: co-existence status ("competition" or "monoculture")
day: day of experiment
species: mite species ("CRM" or "WCM")
n: population density
model.R
The R script with the GAMM fitted to the trajectory data; also produces simulations from this model (saved as sim.csv).
sim.csv (simulations from the GAMM)
day: day of experiment
spec_var: combination of co-existence status ("competition" or "monoculture") and species ("CRM" or "WCM")
X1:X1000: population densities simulated from the fitted GAMM (on the log scale)
reg.RData
The GAMM for growth rates.
NFD_over_time_monte_carlo_gam.py
Python script to compute niche and fitness differences. Takes sim.csv (densities over time for different instantiations) and reg.RData ( stores the GAMM from R for the growth rates) as input and generates the file Data_NFD_monte_carlo_multi_c.csv which stores the niche and fitness differences computed for these communities.
figures.R
The R script that produces Figures 2-5.
Notes
Files
sim.csv
Files
(2.4 MB)
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