Published March 24, 2023
| Version v1.0.0
Dataset
Open
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case
Authors/Creators
- 1. KU Leuven, Rega Institute for Medical Research, Laboratory of Molecular Bacteriology
- 2. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
- 3. Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes P.O. Box 2214, 71003, Heraklion, Crete, Greece
- 4. Flanders Marine Institute (VLIZ), Oostende, Belgium
- 5. Centro de Ciências do Mar (CCMAR), Universidade do Algarve, Campus de Gambelas, 8005-139, Faro, Portugal
- 6. CNRS, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), Roscoff, France
- 7. Department of Biological Sciences, The George Washington University, District of Columbia, USA
Description
Data products returned by metaGOflow (v1.0.0) and packed as a Research Object (RO) Crate, when performed with:
- a seawater metagenomic sample (TARA OCEAN, ERR599171)
- a fish gut sample (ERR4765907)
- a human gut sample (SRR9654976)
This Zenodo repo accompanies the metaGOflow paper and more about the analysis of this sample can be found there.
You can also have a look at some visual components of the workflow at this GitHub page.
The source code of metaGOflow is available through GitHub.