Published July 26, 2023 | Version v1
Dataset Open

Hyperspectral Placenta Dataset: Hyperspectral Image Acquisition, Annotations, and Processing of Biological Tissues in Microsurgical Training

  • 1. Kuopio University Hospital
  • 2. University of Eastern Finland

Description

The dataset consists of 101 hyperspectral images of four fresh human placentas and six hyperspectral images of contrast dyes (i.e., indocyanine green and red and blue food colorant) that were captured in the range 515-900 nm, step = 5 nm. The hyperspectral images were manually annotated, delineating the key anatomical structures: arteries, veins, stroma, and the umbilical cord. Standard reference materials were used for flat-field correction. The dataset can be used to develop machine learning algorithms for the automated classification of biological structures, particularly the classification of superficial and deep vessels and transparent tissue layers.

Notes

The work was supported by personal grants (S. Puustinen) from the Finnish Culture Foundation North Savo Regional Fund (grant number: 65211965) and Finnish Medical Foundation (grant numbers: 5549, 4584). The Microneurosurgery Research Group was funded by the Academy of Finland, the Northern Savo National Research Funds (VTR), and the Finnish Medical Foundation. The research facilities and infrastructure were supported by the Northern Savo regional district and the European Regional development funds. The work is part of the Academy of Finland Flagship Programme, Photonics Research and Innovation (PREIN), decision 320166.

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Additional details

Related works

Is published in
Journal article: 10.1016/j.dib.2023.109526 (DOI)
Is supplemented by
Software: 10.5281/zenodo.8046363 (DOI)

Funding

Research Council of Finland
MicroDuet: Interpersonal Synchrony in Dual Microsurgical Performance in the Operating Room 338492
Research Council of Finland
Photonics Research and Innovation / Consortium: PREIN 320166