Published June 12, 2023
| Version 2.4.0
Software
Open
nf-core/methylseq: [2.4.0] Gillespie Gaia
Creators
- Phil Ewels1
- Patrick HΓΌther2
- Sateesh_Peri
- Nathan Spix3
- Edmund Miller
- nf-core bot
- Matthias HΓΆrtenhuber4
- Alexander Peltzer5
- Sven F.6
- Johannes Alneberg7
- Paolo Di Tommaso8
- Maxime U Garcia9
- Colin Davenport
- Vikesh Ajith
- Felix Krueger10
- Harshil Patel8
- Alessia
- Guillaume Devailly11
- Robert Syme8
- Simon Pearce
- VIJAY12
- Kevin Menden13
- Noirot CΓ©line11
- 1. @seqeralabs
- 2. @imbforge
- 3. Van Andel Institute
- 4. @ScilifelabDataCentre
- 5. Boehringer Ingelheim
- 6. QBiC @qbicsoftware
- 7. National Genomics Infrastructure
- 8. Seqera Labs
- 9. @seqeralabs | Stockholm
- 10. Altos Labs, Cambridge Institute of Science
- 11. INRAE
- 12. CLEVELAND CLINIC
- 13. AIRAmed
Description
Pipeline Updates
- Updated template to nf-core/tools v2.8
- Add
--bamqc_regions_file
parameter for targeted methylation sequencing data #302 - β¨ Add NF-TEST tests and snapshots for the pipeline test profile #310
- π οΈ update index file channels to explicit value channels #310
- π fix
params.test_data_base
in test and test_full configs #310 - π€ GitHub Actions CI - pull_reqest to
dev
tests with NXF_VERlatest-everything
#310 - π€ GitHub Actions CI - pull_reqest to
master
tests with NXF_VER22.10.1
&latest-everything
#310 - π€ GitHub Actions CI -
fail-fast
set to false #310 - π get to the bottom of index tests #278
- β¨ Support for Bismark methylation extraction
ignore
andignore_3prime
parameters whenignore_r1
orignore_3prime_r1
are greater than 0. #322 - π οΈ rename
ignore
->ignore_r1
andignore_3prime
->ignore_3prime_r1
params #322 - π removed unused directory #297
Files
nf-core/methylseq-2.4.0.zip
Files
(4.1 MB)
Name | Size | Download all |
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Additional details
Related works
- Is supplement to
- https://github.com/nf-core/methylseq/tree/2.4.0 (URL)