AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Features

• More efficient handling of splines in SBML models by @paulstapor, @lcontento, @dweindl in https://github.com/AMICI-dev/AMICI/pull/1515
• Partial support of current PEtab2.0 draft, including support for PySB models by @dweindl, @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1800

Fixes

• Fixed incorrect forward sensitivities for models with events with state-dependent trigger functions by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2084
• Model import: Don't create spl.h and sspl.h for models without splines by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2088
• SBML import - faster processing of SpeciesReference IDs by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2094
• Update swig ignores by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2098
• CMake: Fixed choosing SWIG via SWIG env variable by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2100
• CMake: Try FindBLAS if no other information was provided by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2104
• Fixed cblas error for models without solver states in combination with forward sensitivities by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2108
• Fixed compilation error for models with events and xdot=0 by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2111
• Fixed import error for models with events and 0 states by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2112

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.17.1...v0.18.0