Published March 13, 2026 | Version v1.0.1
Software Open

AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Authors/Creators

Description

Fixes

  • Fixed an issue that resulted in failure to import the PetabImporter if the jax-dependencies weren't installed.
  • Fixed a pandas>=3.0 compatibility issue in the PEtab importer which resulted in incorrect selection of fixed parameters.
  • Fixed logger configuration for simulation warnings/errors, such that users can adjust the log level or simulations with, e.g., logging.getLogger("amici.sim.sundials").setLevel(logging.ERROR)
  • Fixed various broken links and outdated function names in the documentation.

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v1.0.0...v1.0.1

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

Files

AMICI-dev/AMICI-v1.0.1.zip

Files (4.7 MB)

Name Size Download all
md5:59ed8abdd04023d2de83071b8bd955cc
4.7 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/AMICI-dev/AMICI/tree/v1.0.1 (URL)

Software

Repository URL
https://github.com/AMICI-dev/AMICI