Published April 6, 2023 | Version v1.0.0
Dataset Open

Data underlying OpenPBTA Manuscript Figures and Molecular Alterations

Authors/Creators

  • 1. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, USA
  • 2. Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia; Division of Neurosurgery, Children's Hospital of Philadelphia; Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia
  • 3. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, USA; Rowan University, Glassboro, NJ, USA
  • 4. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, USA; Fred Hutchinson Cancer Center, Seattle, WA, USA
  • 5. Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia; Division of Neurosurgery, Children's Hospital of Philadelphia
  • 6. Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia; Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia
  • 7. Cell and Molecular Biology Graduate Group, Perelman School of Medicine at the University of Pennsylvania; Division of Oncology, Children's Hospital of Philadelphia
  • 8. Ben May Department for Cancer Research, University of Chicago, Chicago IL, USA
  • 9. Greehey Children's Cancer Research Institute, UT Health San Antonio
  • 10. Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia
  • 11. Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia; Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine
  • 12. Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute
  • 13. Department of Developmental Neurobiology, St. Jude Children's Research Hospital
  • 14. Children's National Research Institute, Washington, D.C.; George Washington University School of Medicine and Health Sciences, Washington, D.C.
  • 15. Division of Hematology/Oncology, Hasbro Children's Hospital; Department of Pediatrics, The Warren Alpert School of Brown University, Providence, Rhode Island
  • 16. Division of Oncology, Children's Hospital of Philadelphia
  • 17. Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA
  • 18. Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania; Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, USA
  • 19. Biotechnology Center, Technical University Dresden, Germany; National Center for Tumor Diseases, Dresden, Germany
  • 20. University of California, San Francisco, San Francisco, CA
  • 21. University of California, San Francisco, San Francisco, CA, USA
  • 22. Division of Oncology, Children's Hospital of Philadelphia; Department of Pediatrics, University of Pennsylvania
  • 23. Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
  • 24. Division of Hematology, Oncology, Neuro-Oncology, and Stem Cell Transplant, Ann & Robert H Lurie Children's Hospital of Chicago; Department of Pediatrics, Northwestern University Feinberg School of Medicine
  • 25. Division of Hematology and Oncology, Children's Hospital Los Angeles; Department of Pediatrics, Keck School of Medicine of University of Southern California
  • 26. Hackensack Meridian School of Medicine; Hackensack University Medical Center
  • 27. Division of Oncology, Children's Hospital of Philadelphia; Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia
  • 28. Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA; Department of Pediatrics, University of Pennsylvania, Philadelphia, PA; Abramson Family Cancer Research Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
  • 29. Division of Neurosurgery, Children's Hospital of Philadelphia; Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
  • 30. Department of Pediatrics, University of Michigan Health, Ann Arbor, MI; Pediatric Hematology Oncology, Mott Children's Hospital, Ann Arbor, MI
  • 31. Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, USA; Center for Health AI, University of Colorado School of Medicine, Aurora, CO, USA; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA

Description

This upload contains CSV files that represent data contained in plots shown in the OpenPBTA manuscript. It is intended to facilitate inspection of the underlying data shown in each figure and to explicitly capture which samples are included in figures (where applicable). Please see the README included in the upload for more information about individual files.

To reproduce the figures, we recommend using the code in the analysis repository: https://github.com/AlexsLemonade/OpenPBTA-analysis. Please see the figures/ directory documentation in the repository and the documentation for figure generation scripts (figures/scripts/README.md).

The version of the upload corresponds to the version of the release in the analysis repository.

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openpbta-manuscript-figure-data-v1.0.0.zip

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