Published April 24, 2023
| Version v1
Dataset
Open
Assembly and annotation of the saguaro cactus genome – SGP5p v2
Creators
- 1. University of Arizona
- 2. National Autonomous University of Mexico
- 3. University of Zurich
- 4. Arizona State University
Description
We present an improved genome assembly of the saguaro cactus (Carnegiea gigantea (Engelm.) Britton & Rose), obtained by incorporating long-read PacBio data to the existing short reads. The assembly improves in terms of total size, contiguity, and accuracy, allowing us to extend the range of sequence analyses beyond the single-gene scale. Consequently, 20% more genes were identified, expanding the resources for a neglected yet very peculiar plant family such as Cactaceae.
Notes
Files are in standard formats for genomic data: fasta and gff.
Files
README.md
Files
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Additional details
Related works
- Is cited by
- 10.1101/2023.04.11.536419 (DOI)