The Florida Center for Coastal and Human Health Metagenomic Workflow

The initial release of the Florida Center for Coastal and Human Health Metagenomics Workflow. Databases are hardcoded for the FCH server and should be modified for other institutions. This is a wrapper program that calls software to preprocess raw reads, annotate high-quality reads with taxonomy, assemble high-quality reads, create anvi'o databases and profiles, bin contigs, and annotate contigs for biosynthetic gene clusters. Install environments using yaml files. Contact René Xavier with any concerns (rmillerxavie2017@fau.edu) or post an issue here.