BGSpiegl/GCparagon: v0.5.3-beta

Intended for the purpose of SW publication. Includes additional code and plots for target output checking for the processing of 4 WGS samples deposited at the European Genome-Phenome Archive (EGA): https://ega-archive.org/studies/EGAS00001006963 Newest version on this branch can also be cloned using "git clone --branch including_EGAS00001006963_results --single-branch https://github.com/BGSpiegl/GCparagon.git" includes;

• main code
• YAML file for easy conda software environment creation
• 2bit reference genome download
• blacklist processing
• preselection of genomic chunks
• target output files for preset computation
• computation of GC content reference distribution based on fragment length distribution