Published March 31, 2023 | Version v1.2.0
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pathomove: An individual-based model for the evolution of animal movement strategies under the risk of pathogen transmission

Authors/Creators

  • 1. University of Groningen

Description

This repository holds the source code for the Pathomove simulation, a spatially explicit, individual-based, evolutionary model of the evolution of animal social movement strategies under the risk of pathogen transmission.

This is a release of a corrected version of the simulation model code, in preparation for a resubmission to eLife. The main changes here are:

  1. Correction of the implementation of exploitation competition;
  2. Addition of unit tests for agent movement, foraging, and inheritance;
  3. Addition of linting workflows for the C++ code;
  4. Reorganisation of the package code to move most of the C++ code into header files that allow building other Rcpp packages on top of pathomove.

Notes

This work was developed in the Modelling Adaptive Response Mechanisms Group (Weissing Lab) (https://www.marmgroup.eu/) at the Groningen Institute for Evolutionary Life Science, at the University of Groningen.

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