Spineless and overlooked: DNA metabarcoding of autonomous reef monitoring structures reveals intra- and interspecific genetic diversity in Mediterranean invertebrates
Creators
- 1. County Administrative Board of Västerbotten
- 2. Liverpool John Moores University
- 3. University of Bologna
- 4. Department of Cultural Heritage
Description
Sequence data and stepwise pipeline outputs associated with the article "Spineless and overlooked: DNA metabarcoding of autonomous reef monitoring structures reveals intra- and interspecific genetic diversity in Mediterranean invertebrates".
Preprint available here: 10.22541/au.167085544.47638352/v1
Sequence data is deposited in fastq-format in folders by region (Palinuro.tar.gz, Livorno.tar.gz, and Rovinj.tar.gz) and a separate folder for controls (Controls.tar.gz). Each fastq-file contains sequences for a single PCR replicate named by sample and replicate number. Sample names are described in spineless_sample_names.csv. Positive control sequences are described in SM1_positive_controls.csv. Stepwise pipeline outputs are available in the folder Pipeline_outputs_stepwise.zip
Scripts used to generate pipeline outputs as well as other aspects of the final article are available at https://github.com/thomasdotter/spineless-haplotypes.
Notes
Files
files.zip
Files
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Additional details
Related works
- Is supplement to
- Preprint: 10.22541/au.167085544.47638352/v1 (DOI)
- Is supplemented by
- Workflow: https://github.com/thomasdotter/spineless-haplotypes (URL)