Published March 28, 2023
| Version 0.1.0
Dataset
Open
Processed data to regenerate figures in Noecker et al, "Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta"
Creators
- 1. University of California San Francisco
- 2. Chan-Zuckerberg Biohub
- 3. Pennsylvania State University
- 4. National University of Ireland
- 5. Stanford University
Description
This archive contains the processed source data for the publication by Noecker et al, "Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta" (2023, in review). Data tables underlying each figure panel are included, except for the following panels:
- Figure S1A: Source data is in Table S1 of the publication
- Figure 6D: Source data can be found at NCBI GEO accession GSE212420 (supplementary counts data matrix)
Raw metabolomics data can also be found at Metabolomics Workbench accession PR001620.
Methods used to summarize these data and generate the figures are described in the manuscript Materials and Methods and figure captions. Code to generate all figures is also available at www.github.com/turnbaughlab/2022_Noecker_ElentaMetabolism and 10.5281/zenodo.7779454.
Files
figure3DE_LOO_FBA_comparison.pdf
Files
(443.5 MB)
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