Published March 23, 2023
| Version v0.4.0
Software
Open
open2c/bioframe: v0.4.0
Creators
- 1. MIT
- 2. IMBA
- 3. University of Massachusetts Medical School
- 4. FMI
- 5. LUMICKS
Description
API changes:
- New strand-aware directionality options for
closest()viadirection_col#129. - New index-based range query selectors on single bioframes to complement
select()#128:select_mask()returns boolean indices corresponding to intervals that overlap the query regionselect_indices()returns integer indices corresponding to intervals that overlap the query regionselect_labels()returns pandas label indices corresponding to intervals that overlap the query region
Bug fixes:
- Import fixes in sandbox
- Relax bioframe validator to permit using same column as start and end (e.g. point variants).
Files
open2c/bioframe-v0.4.0.zip
Files
(838.7 kB)
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md5:35db4a68509d99f41ed30cab3e4e75c9
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Additional details
Related works
- Is supplement to
- https://github.com/open2c/bioframe/tree/v0.4.0 (URL)