Published December 5, 2023
| Version v2023-12-05
Software
Open
obophenotype/cell-ontology: v2023-12-05
Creators
- Shawn Tan
- Chris Mungall1
- Nicole Vasilevsky2
- Aleix Puig3
- Nico Matentzoglu4
- David Osumi-Sutherland5
- paolaroncaglia
- Damien Goutte-Gattat6
- Anita Caron7
- Alexander Diehl8
- Ismail Ugur Bayindir
- Melissa Haendel
- Tiago Lubiana9
- Harshad1
- JoshuaFortriede
- Maria Keays
- PaulaDuekRoggli
- Ray Stefancsik
- Arlene
- Matthew Brush10
- Alan Ruttenberg
- Arwa Ibrahim
- ybradford
- Benjamin M. Gyori11
- Bonita Lam12
- Charles Tapley Hoyt13
- JArgasinska
- Jim Balhoff14
- Zoë May Pendlington7
- uberon
- 1. Lawrence Berkeley National Laboratory
- 2. Critical Path Institute
- 3. EBI-EMBL
- 4. semanticly Ltd
- 5. www.virtualflybrain.org
- 6. University of Cambridge
- 7. EMBL-EBI
- 8. University at Buffalo
- 9. University of São Paulo
- 10. Oregon Health and Science University
- 11. Northeastern University
- 12. Agilent Technologies
- 13. @northeastern
- 14. @RENCI
Description
v2023-10-19
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/286560fd1a9f672bc44ae1846fc2f136c986bee9/src/ontology/diffs/cl-diff.md
What's Changed
- Addresses #1149 obsolete 'barrier epithelial cell' and 'seminal flui… in https://github.com/obophenotype/cell-ontology/pull/2206
- Add slim coverage check running on local (branch) copy CL by @ubyndr in https://github.com/obophenotype/cell-ontology/pull/2182
- Fixes #2212 class hierarchy 'peritubular capillary endothelial cell' by @aleixpuigb in https://github.com/obophenotype/cell-ontology/pull/2213
- Fixes #2209 relabel fat cell by @aleixpuigb in https://github.com/obophenotype/cell-ontology/pull/2210
- Adding
ontobot-change-agent
to create PRs based on appropriate Issues. by @hrshdhgd in https://github.com/obophenotype/cell-ontology/pull/2211 - Update README.md by @dosumis in https://github.com/obophenotype/cell-ontology/pull/2215
- Fixes #1266 populate mononuclear phagocyte by @aleixpuigb in https://github.com/obophenotype/cell-ontology/pull/2208
- Addresses #2219 Revise logical definition for 'kidney collecting duct… in https://github.com/obophenotype/cell-ontology/pull/2220
- Uncommented crucial line in
ontobot.yml
by @hrshdhgd in https://github.com/obophenotype/cell-ontology/pull/2226 - Addresses #2203 [NTR-cxg] 'L5/6 near-projecting glutamatergic neuron' in https://github.com/obophenotype/cell-ontology/pull/2222
- Update README.md by @dosumis in https://github.com/obophenotype/cell-ontology/pull/2218
- Addresses #2224 Edit 'epithelial cell of lacrimal duct' in https://github.com/obophenotype/cell-ontology/pull/2229
- Addresses #2030 Make kidney subset in https://github.com/obophenotype/cell-ontology/pull/2230
- Check for the phrase
Hey ontobot
before running the workflow by @hrshdhgd in https://github.com/obophenotype/cell-ontology/pull/2228 - File clean up fix for generic_coverage.py by @ubyndr in https://github.com/obophenotype/cell-ontology/pull/2223
- Update inadvertently added contributor annotations in https://github.com/obophenotype/cell-ontology/pull/2232
- Addresses #2202 NTR 'L6 IT Car3 glutamatergic neuron' in https://github.com/obophenotype/cell-ontology/pull/2234
- Fix duplicated cross-references. by @gouttegd in https://github.com/obophenotype/cell-ontology/pull/2236
- add new term 'mesenchymal stem cell of apical papilla by @paulacalipho in https://github.com/obophenotype/cell-ontology/pull/2214
- Refresh imports in preparation for CL release by @aleixpuigb in https://github.com/obophenotype/cell-ontology/pull/2237
- CL release 2023-12-05 by @aleixpuigb in https://github.com/obophenotype/cell-ontology/pull/2238
New Contributors
- @hrshdhgd made their first contribution in https://github.com/obophenotype/cell-ontology/pull/2211
Full Changelog: https://github.com/obophenotype/cell-ontology/compare/v2023-10-19...v2023-12-05
Files
obophenotype/cell-ontology-v2023-12-05.zip
Files
(23.7 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/obophenotype/cell-ontology/tree/v2023-12-05 (URL)