Published March 17, 2023 | Version 0.2
Software Open

fischuu/Snakebite-RNAseq: Release version 0.2

  • 1. Natural Resources Institute Finland (Luke)

Description

First release version, including these updates:

0.1.*: UPDATES
  • 17: Added the {wildcards.samples}_Aligned.out.bam output to the rule rule star_map_reads
  • 16: STAR aligned reports now also unsorted SAM files for metatranscriptomics
  • 15: Config options better explained
  • 14: Output file dependencied from STAR alignments for metatranscriptomics further adjusted
  • 13: Adjusted the output files from STAR alignments for metatranscriptomics
  • 12: Added the 'mode' option to account for metagenomic studies
  • 11: Option limitGenomeGenerateRAM added to the STAR genome builder
  • 10: Added the genomeChrBinNbits option to STAR, to account for larger genomes
  • 9: Bugfix, -t option in rule featureCounts_quantify_merged
  • 8: Added to STAR index the parameter genomeSAindexNbases
  • 7: FeatureCounts merged attribute types fixed
  • 6: Bugfix, filenames
  • 5: Attribute type and feature type added for featureCounts
  • 4: Decontamination works now properly
  • 3: Contamination statistics added to the final report
  • 2: Added the decontamination step
  • 1: Inital submission

Files

fischuu/Snakebite-RNAseq-0.2.zip

Files (24.2 kB)

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