Published March 17, 2023
| Version 0.2
Software
Open
fischuu/Snakebite-RNAseq: Release version 0.2
Description
First release version, including these updates:
0.1.*: UPDATES- 17: Added the {wildcards.samples}_Aligned.out.bam output to the rule rule star_map_reads
- 16: STAR aligned reports now also unsorted SAM files for metatranscriptomics
- 15: Config options better explained
- 14: Output file dependencied from STAR alignments for metatranscriptomics further adjusted
- 13: Adjusted the output files from STAR alignments for metatranscriptomics
- 12: Added the 'mode' option to account for metagenomic studies
- 11: Option limitGenomeGenerateRAM added to the STAR genome builder
- 10: Added the genomeChrBinNbits option to STAR, to account for larger genomes
- 9: Bugfix, -t option in rule featureCounts_quantify_merged
- 8: Added to STAR index the parameter genomeSAindexNbases
- 7: FeatureCounts merged attribute types fixed
- 6: Bugfix, filenames
- 5: Attribute type and feature type added for featureCounts
- 4: Decontamination works now properly
- 3: Contamination statistics added to the final report
- 2: Added the decontamination step
- 1: Inital submission
Files
fischuu/Snakebite-RNAseq-0.2.zip
Files
(24.2 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/fischuu/Snakebite-RNAseq/tree/0.2 (URL)