Data for "Segmentation of human functional tissue units in support of a Human Reference Atlas"

Published March 13, 2023 | Version v1

Dataset Open

1. Cyberinfrastructure for Network Science (CNS), Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, Indiana, United States of America
2. Department of Pathology, Stanford University, Stanford, CA, USA
3. Thermo Fisher Scientific, South San Francisco, CA 94080, USA
4. Department of Surgery, Washington University School of Medicine, St. Louis, MO 63110
5. Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
6. Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
7. Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN 37232, USA; Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232
8. Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN 37232, USA; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN 37232

This repository contains the data documented in the paper "Segmentation of human functional tissue units in support of a Human Reference Atlas".

The directories contain:

The HuBMAP and HPA image data, ground truth segmentation masks, and predicted segmentation masks, as documented in the paper.
The source data for recreating the figures 3 and 4 in the paper.

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Name	Size	Download all
data.zip md5:7b94d816d4faf84bb562e447be8eb566	33.6 GB	Preview Download