Published May 24, 2024 | Version v2
Dataset Open

Benchmark datasets for biomedical knowledge graphs with negative statements

  • 1. LASIGE

Description

We present a collection of datasets for three relation prediction tasks - protein-protein interaction prediction, gene-disease association prediction and disease prediction - that aim at circumventing the difficulties in building benchmarks for knowledge graphs with negative statements. These datasets include data from two successful biomedical ontologies, Gene Ontology and Human Phenotype Ontology, enriched with negative statements. 

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