Data and analysis scripts for: Lung adenocarcinoma promotion by air pollutants

Code for "Lung adenocarcinoma promotion by air pollutants" manuscript

egfrm_lc_incidence

• Epidemiological analyses of EGFRm lung cancer incidence and PM2.5 levels in England (NHS England), South Korea and Taiwan.

ukbb

• Epidemiological analyses of lung cancer incidence and PM2.5 levels in England, using the UKBB data set.

mouse_RNA_seq

• Analysis of RNA-seq data derived from lung tumour tissue of pollution-exposed mice.

mouse_WGS

• Analysis of WGS data derived from lung tumour tissue of pollution-exposed mice.

normal_lung

• Analysis of ddPCR for EGFRm from normal lung tissue from the TRACERx and PEACE cohorts.
• Analysis of Duplex-seq data from normal lung tissue from the PEACE and BDRE cohorts.