Published February 16, 2023 | Version v.1.00.000
Dataset Open

Raw Data: Timing of Calanus finmarchicus diapause in stochastic environments

  • 1. Akvaplan niva AS
  • 2. University of Bergen
  • 3. University of Laval
  • 4. Woods Hole Oceanographic Institution
  • 5. Nord University

Description

This dataset contains the raw (unprocessed) model outputs of the Individual-Based Model used to generate the research article: 

Bandara, K., Varpe, Ø., Maps, F., Ji, R., Eiane, K., & Tverberg, V. (2021). Timing of Calanus finmarchicus diapause in stochastic environments. Ecological Modelling460, 109739.

Description

ITEM DESCRIPTION
----------------
CONTENTS                          : RAW DATA FILES
UNCOMPRESSED SIZE      : 19.6 GB 
COMPRESSION                   : YES
COMPRESSED SIZE           : 3.74 GB
COMPRESSION FORMAT  : .ZIO
ENCRYPTION                      : NO
ENCRYPT METHOD            : N/A
INTERNAL FILE TYPE(S)    : .CSV
SOURCE                              : PASCAL 
ID                                          : v3.x (2020-2022)
DECRYPTION PASSWD      : N/A
DOWNLOADABLE FROM    : 10.5281/zenodo.7646734

DATA DESCRIPTION
----------------
THIS ARCHIVE CONTAINS FIVE (05) DIRECTORIES. EACH FROM A SINGLE SIMULATION EXPERIMENT, INDICATED BY THE FILE NAMES. 
+ DeterministicSetting            : SIMULATION RAN IN DETERMINISTIC MODEL ENVIRONMENT (FIG. 2A-C)
+ STStochasticSetting           : SIMULATION RAN IN SHORTER-TERM (6-H) STOCHASTIC ENVIRONMENT (FIG. 2D-F)
+ LTStochasticSetting-TFI    : SIMULATION RAN IN LONGER-TERM (INTERANNUAL) STOCHASTIC ENVIRONMENT WITH GROWTH POTENTIAL VARIABILITY ONLY (FIG. 2G)
+ LTStochasticSetting-VPR    : SIMULATION RAN IN LONGER-TERM (INTERANNUAL) STOCHASTIC ENVIRONMENT WITH GROWTH POTENTIAL + VISUAL PREDATION RISK VARIABILITY (FIG. 2G)
+ LTStochasticSetting-NVPR  : SIMULATION RAN IN LONGER-TERM (INTERANNUAL) STOCHASTIC ENVIRONMENT WITH GROWTH POTENTIAL VARIABILITY + NON-VISUAL PREDATION RISK VARIABILITY (FIG. 2G)

KEY
---
+ AnnualLog                 : DOUBLE VALUES OF LOW-RESOLUTION TRACKERS    
+ DailyLog_I                 : INTEGER VALUES OF HIGH-RESOLUTION TRACKERS
+ DailyLog_R                : DOUBLE VALUES OF HIGH-RESOLUTION TRACKERS
+ VerticalPosition_N     : INTEGER VALUES OF POPULATION VERTICAL DISTRIBUTION (NUMBER OF INDIVIDUALS IN EACH 1M x 6H BIN)
+ VerticalPosition_CW  : DOUBLE VALUES OF AVERAGE BODYMASS VERTICAL DISTRIBUTION (AVERAGE INDIVIDUAL BODYMASS IN EACH 1M x 6H BIN) :: UNUSED IN ANALYSES
+ VerticalPosition_SW   : DOUBLE VALUES OF AVERAGE ENERGY RESERVE VERTICAL DISTRIBUTION (AVERAGE INDIVIDUAL ENERGY RESERVES [LIPIDSCAPE] IN EACH 1M x 6H BIN) :: UNUSED IN ANALYSES
+ FoodConcentration     : DOUBLE VALUES OF 1D FOOD ENVIRONMENT
+ Irradiance                    : DOUBLE VALUES OF 1D SUB-SURFACE IRRADIANCE ENVIRONMENT
+ Temperature                : DOUBLE VALUES OF 1D TEMPERATURE ENVIRONMENT
+ VisualPredationRisk    : DOUBLE VALUES OF 1D UNSCALED VISUAL PREDATION ENVIRONMENT

NOTES
-----
The above attributes (excl. AnnualLog) are recorded for 100 calendar year in the LTStochasticSetting-TFI, LTStochasticSetting-VPR & LTStochasticSetting-NVPR simulations.
These are named after the year number (e.g. DailyLog_I_1, DailyLog_I_2....)

ADDITIONAL FILES
----------------
SOME DIRECTORIES MAY CONTAIN ADDITIONAL FILES, SUCH AS THOSE USED AS PCA INPUTS. THESE ARE PROCESSED FILES.
AVERAGE ANNUAL ENVIRONMENTAL VARIABLES TRACED IN THE "ENV" DIRECTORY (ONLY FOR LONGER-TERM STOCHASTIC SIMULATIONS).

FURTHER QUESTIONS?
------------------
Direct further question, either to: info@kanchanabandara.com (personal) or kba@akvaplan.niva.no (official)

Files

RAWDATA.zip

Files (8.0 GB)

Name Size Download all
md5:ab0b298643ef9c57c4fb5d3359ce8a49
8.0 GB Preview Download

Additional details

Related works

Compiles
Journal article: 10.1016/j.ecolmodel.2021.109739 (DOI)

References

  • Bandara, K., Varpe, Ø., Maps, F., Ji, R., Eiane, K., & Tverberg, V. (2021). Timing of Calanus finmarchicus diapause in stochastic environments. Ecological Modelling, 460, 109739.