Published January 27, 2023
| Version v0.2.0
Software
Open
Rare Type III functional responses (Code): Version 0.2.0
Description
Version 0.2.0 - New Figure 1C
This version includes mainly the updated code for figure 1C. Additionally, some minor changes across the code were applied.
Version 0.1.0 - Initial Release
Code to create figure 1 for the manuscript "Empirical evidence of type III functional responses and why it remains rare" by Kalinkat, Rall, Uiterwaal and Uszko which is currently under review.
The code is under development, but works and produces the scientifically correct output.
Bugs may appear if parameter values or other arguments are changed.
The description may lack some details and will be updated.
Notes
BCR gratefully acknowledges the funding by the German Science Foundation (DFG) to the Research Unit Kili-SES (FOR 5064).
Files
b-c-r/rare-type-3-responses-v0.2.0.zip
Files
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Additional details
Related works
- Is described by
- Software documentation: 10.5281/zenodo.7573617 (DOI)
- Is new version of
- Software: 10.5281/zenodo.7557473 (DOI)
- Is supplement to
- Software: https://github.com/b-c-r/rare-type-3-responses/tree/v0.2.0 (URL)
References
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- Daniel, Folashade, Microsoft, and Steve Weston. 2022. 'Foreach: Provides Foreach Looping Construct'. https://CRAN.R-project.org/package=foreach
- Daniel, Folashade, Revolution Analytics, and Steve Weston. 2022. 'Iterators: Provides Iterator Construct'. https://CRAN.R-project.org/package=iterators
- Keitt, Timothy H. 2017. 'Odeintr: C++ ODE Solvers Compiled on-Demand'. X86_64-w64-mingw32/x64 (64-bit). https://CRAN.R-project.org/package=odeintr
- Okuyama, Toshinori, and Robert L. Ruyle. 2011. 'Solutions for Functional Response Experiments'. Acta Oecologica 37 (5): 512–16. https://doi.org/10.1016/j.actao.2011.07.002
- Otto, Sonja B., Björn Christian Rall, and Ulrich Brose. 2007. 'Allometric Degree Distributions Facilitate Food-Web Stability'. Nature 450 (7173): 1226–29. https://doi.org/10.1038/nature06359
- R Core Team. 2022. 'R: A Language and Environment for Statistical Computing.' X86_64-w64-mingw32/x64Windows. R. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/
- Rall, Björn C., Christian Guill, and Ulrich Brose. 2008. 'Food-Web Connectance and Predator Interference Dampen the Paradox of Enrichment'. Oikos 117 (2): 202–13. https://doi.org/10.1111/j.2007.0030-1299.15491.x
- Real, Leslie A. 1977. 'The Kinetics of Functional Response'. The American Naturalist 111 (978): 289–300. https://doi.org/10.1086/283161
- Vucic‐Pestic, Olivera, Björn Christian Rall, Gregor Kalinkat, and Ulrich Brose. 2010a. 'Allometric Functional Response Model: Body Masses Constrain Interaction Strengths'. Journal of Animal Ecology 79 (1): 249–56. https://doi.org/10.1111/j.1365-2656.2009.01622.x
- Williams, R. J., and N. D. Martinez. 2004. 'Stabilization of Chaotic and Non-Permanent Food-Web Dynamics'. The European Physical Journal B: Condensed Matter and Complex Systems 38 (2): 297–303. https://doi.org/10.1140/epjb/e2004-00122-1
- Wood, Simon. 2022. 'Mgcv: Mixed GAM Computation Vehicle with Automatic Smoothness Estimation'. X86_64-w64-mingw32/x64 (64-bit). R. https://CRAN.R-project.org/package=mgcv
- Sarnelle and Wilson 2008. 'Type III functional response in Daphnia'. Ecology 89 (6): 1723-1732. https://doi.org/10.1890/07-0935.1
- Coblentz, Novak and DeLong 2022. 'Predator feeding rates may often be unsaturated under typical prey densities' . Ecology Letters 00: 1-11. https://doi.org/10.1111/ele.14151