Published January 26, 2023
| Version 1.0.0
Dataset
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TRACERx PHLEX test dataset, model weights & TRACERx nuclear IMC segmentation dataset
Authors/Creators
- 1. Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London, UK
- 2. Department of Cellular Pathology, University College London Hospitals, London, UK
- 3. Oncogene Biology Laboratory, The Francis Crick Institute, London, UK
- 4. Flow Cytometry, The Francis Crick Institute, London, UK
- 5. Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, UK.
- 6. Tumour Cell Biology Laboratory, The Francis Crick Institute, London, UK
Description
This repository contains three archives pertaining to the TRACERx PHLEX multiplexed imaging pipelines.
- Weights for the deep-imcyto neural network models
- The PHLEX test dataset consisting of two .ome.tiff files of imaging mass cytometry data
- The TRACERx Nuclear IMC Segmentation dataset, a training dataset of IMC image tiles and ~42,000 expert labelled nuclei from diverse lung, normal and other tissue types.
Files
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The record is publicly accessible, but files are restricted to users with access.
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Dataset is currently available only on request for the purposes of peer review.
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